Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T10B5.7
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Query: T10B5.7 CE18237 lipase status:Confirmed TR:O76409 protein_id:AAC19230.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Lipase_3 Lipase (class 3) 204.2 2.1e-60 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Lipase_3 1/1 91 234 .. 1 175 [] 204.2 2.1e-60
Alignments of top-scoring domains:
Lipase_3: domain 1 of 1, from 91 to 234: score 204.2, E = 2.1e-60
*->rrdIvvafRGTltllellddlliflttdvtpfefdgninveddqddp
++I++afRGT + l+ll + + +++++
T10B5.7 91 DKAIIIAFRGTKGVLQLLVESDEI---MYRNKTA------------- 121
vvkvhggfvdlyfhrgflslrdqvleevlrllekykkedypdykivvTGH
+ gg v+ yf r+++ l++ +++e++++ +k++ yp+y+i+v GH
T10B5.7 122 --WFGGGNVGFYFARSYNLLWNAGMKEDFNT-LKHA---YPGYEIWVGGH 165
SLGGAlAsLaAadlvanglnngplqrdssrvtvvtfGsPRvGnkkgeFak
SLGG++A+La+ +lvangl +ss+++++tfG+PR+G+k +Fa+
T10B5.7 166 SLGGSMAALASNYLVANGL------ATSSNLKMITFGEPRTGDK--AFAD 207
avdelvpvksyRvvnrrDiVPrlPpalf<-*
a+d++v +syR+v++ DiVP++P+ +
T10B5.7 208 AHDKMVT-YSYRIVHHKDIVPHIPLNGM 234