Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T10D4.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T10D4.4 CE20044 locus:ins-31 status:Partially_confirmed TR:Q9TZF3 protein_id:AAC68717.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ins_beta_nem Nematode insulin-related peptide beta ty 195.1 2.9e-75 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ins_beta_nem 1/3 30 78 .. 1 50 [] 13.2 0.00064
Ins_beta_nem 2/3 93 142 .. 1 50 [] 100.6 3.3e-38
Ins_beta_nem 3/3 157 206 .. 1 50 [] 96.7 1.2e-36
Alignments of top-scoring domains:
Ins_beta_nem: domain 1 of 3, from 30 to 78: score 13.2, E = 0.00064
*->vRaCGRrLlkrVfavC.GeacnpqndvDIatkCCkkqaGCTddyIks
++ CG L+ rV C++ + + + + + CC+ C d++Ik+
T10D4.4 30 EKTCGGLLIRRVDRICpNLNYTYKIEWELMDNCCEVV--CEDQWIKE 74
acCP<-*
C
T10D4.4 75 TFCR 78
Ins_beta_nem: domain 2 of 3, from 93 to 142: score 100.6, E = 3.3e-38
*->vRaCGRrLlkrVfavCGeacnpqndvDIatkCCkkqaGCTddyIksa
+R+CG++L++rV++vCGe++n++n+v+I+++CC++++GCTdd+Ik++
T10D4.4 93 ERSCGPKLFTRVKTVCGEDINVDNKVKISDHCCTPEGGCTDDWIKEN 139
cCP<-*
+C+
T10D4.4 140 VCK 142
Ins_beta_nem: domain 3 of 3, from 157 to 206: score 96.7, E = 1.2e-36
*->vRaCGRrLlkrVfavCGeacnpqndvDIatkCCkkqaGCTddyIksa
+R+CG++L+krV+++C+e++n++n+v+++++CC+++aGCTdd+Ik++
T10D4.4 157 QRSCGPQLFKRVNTLCNENINVENNVSVSKSCCESAAGCTDDWIKKN 203
cCP<-*
+C+
T10D4.4 204 VCT 206