hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T10F2.3
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Query:  T10F2.3  CE26951    status:Partially_confirmed SW:Q09353 protein_id:AAK21468.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Peptidase_C48 Ulp1 protease family, C-terminal cataly   118.0    9.7e-32   1
Relaxase      Relaxase/Mobilization nuclease domain       3.4        5.9   1
Bunya_NSM     Non-structural protein NSM                  2.9        5.3   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Bunya_NSM       1/1      50    84 ..     1    34 [.     2.9      5.3
Relaxase        1/1     114   168 ..   250   305 .]     3.4      5.9
Peptidase_C48   1/1     500   609 ..     1   140 [.   118.0  9.7e-32

Alignments of top-scoring domains:
Bunya_NSM: domain 1 of 1, from 50 to 84: score 2.9, E = 5.3
                   *->lsnllkslRlSkstnkdegrvva.vltknnksiiV<-*
                       +++++ + +S+s +k++  v  +v  ++  +iiV
     T10F2.3    50    FNTFFGMFVSSNSGEKEKTEVSGeVQVQEDDEIIV    84

Relaxase: domain 1 of 1, from 114 to 168: score 3.4, E = 5.9
                   *->kekGleirekrdtgkkltykgtdenqgtkvrgs...klgrdfyskgk
                      +e++++i+  +  +k++ ++ ++e+  ++v+g+   +l+++++s+++
     T10F2.3   114    EENEVIIE--KHVQKNVEIRNDEEK--QEVQGDlvlTLSSSPKSPKN 156

                   iekrfgerteqr<-*
                   +ek f+ ++  +
     T10F2.3   157 LEKSFEVQQDDE    168

Peptidase_C48: domain 1 of 1, from 500 to 609: score 118.0, E = 9.7e-32
                   *->gisittrdlktltkgewLnDtiidfylrylaerllpdPilkekstaa
                      +i+i  +dl tl+  +wLnD+ii+fyl ++++r++       +s+ +
     T10F2.3   500    SIQICKKDLATLSGLHWLNDEIINFYLQLICDRSNG------DSKYP 540

                   lthffnsFfytklksrfkdgdekdelykdvkrgtarnektkkkdlfdkDi
                   ++++fn+Ffy ++ s++         y+ vkr+t      +k+d+f +Di
     T10F2.3   541 KIYAFNTFFYSNIVSKG---------YASVKRWT------RKVDIFAFDI 575

                   iyvPinedgkkvHWvllvidlpdkkkkdqstivylDSlislnr<-*
                   ++vP++++    HW+++vid  +k      +i+ +DSl ++n+
     T10F2.3   576 VLVPVHLGM---HWCMAVIDMGEK------KIEFYDSLYDGNT    609

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