Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T10H4.12
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Query: T10H4.12 CE27590 locus:cpr-3 cathepsin protease status:Confirmed SW:P43507 protein_id:CAB61032.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C1 Papain family cysteine protease 341.0 1.9e-101 1
Pept_C1-like Peptidase C1-like family 0.9 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pept_C1-like 1/1 300 317 .. 397 415 .. 0.9 8.2
Peptidase_C1 1/1 92 335 .. 1 337 [] 341.0 1.9e-101
Alignments of top-scoring domains:
Pept_C1-like: domain 1 of 1, from 300 to 317: score 0.9, E = 8.2
*->WkVENStWGedsGeKGYfv<-*
W + NS WG + GeKG+f+
T10H4.12 300 WLIANS-WGTSFGEKGFFK 317
Peptidase_C1: domain 1 of 1, from 92 to 335: score 341.0, E = 1.9e-101
*->lPesfDWRe.Wkgga.VtpVKdQGiqCGSCWAFSavgalEgrycikt
lP++fD+Re+W+ ++++ +++Q+ CGSCWAF+a++++++r ci++
T10H4.12 92 LPDTFDAREkWPDCNtIKLIRNQA-TCGSCWAFGAAEVISDRVCIQS 137
gtkawggklvsLSEQqLvDCdgedygnngesCGyGCnGGGlmdnAfeYik
+ g ++ +S ++++C+g +CGyGC+G G+ + A++++
T10H4.12 138 N----GTQQPVISVEDILSCCGT-------TCGYGCKG-GYSIEALRFWA 175
keqIsnNgGlvtEsdYe.kgCkPYtdf.PCgkdggndtyypCpgkaydpn
G vt++dY+++gC PY+ f PC k+ Cp+++
T10H4.12 176 S------SGAVTGGDYGgHGCMPYS-FaPCTKN--------CPESTT--- 207
dTgtCkynckknskypktyakikgygdvpynvsT.ydEealqkalaknGP
++Ck++c+++ + + +y k+k+yg +y v T+++++++q +++++GP
T10H4.12 208 --PSCKTTCQSS-YKTEEYKKDKHYGASAYKVTTtKSVTEIQTEIYHYGP 254
vsVaidasedskgDFqlYksGendvgyGvYkhtsageCggtpfteLdHAV
v+++ ++e DF++YksG vY+ t g+ g +HAV
T10H4.12 255 VEASYKVYE----DFYHYKSG-------VYHYT-SGKLVG------GHAV 286
liVGYGteneggtfdetssskksesgiqvssgsngssgSSgssgapiedk
+i+G+G+en g
T10H4.12 287 KIIGWGVEN-G--------------------------------------- 296
gkdYWIVKNSWGtdWGEnGYfriaRgknksgkneCGIaseasypi<-*
+dYW+++NSWGt+ GE+G+f+i+Rg+n eC I+ +++++i
T10H4.12 297 -VDYWLIANSWGTSFGEKGFFKIRRGTN-----ECQIEGNVVAGI 335