Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T10H9.5
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Query: T10H9.5 CE18253 ABC transporter status:Confirmed TR:O76414 protein_id:AAC19238.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 54.2 1.6e-14 1
PRK Phosphoribulokinase / Uridine kinase fa 5.7 1.3 1
MBOAT MBOAT family 5.3 1.5 1
AAA ATPase family associated with various c 5.1 1.7 1
AAL_decarboxy Alpha-acetolactate decarboxylase 4.8 3.1 1
RNA_helicase RNA helicase 4.7 2.9 1
Peptidase_S26 Signal peptidase I 4.6 2 1
DUF230 Poxvirus proteins of unknown function 4.1 8.7 1
Cdc37 Cdc37 family 2.0 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_S26 1/1 1 19 [. 1 34 [. 4.6 2
DUF230 1/1 69 94 .. 115 140 .] 4.1 8.7
MBOAT 1/1 56 104 .. 342 390 .] 5.3 1.5
Cdc37 1/1 280 288 .. 313 321 .] 2.0 9.5
PRK 1/1 412 427 .. 1 19 [. 5.7 1.3
AAA 1/1 409 428 .. 1 20 [. 5.1 1.7
RNA_helicase 1/1 410 430 .. 126 146 .. 4.7 2.9
ABC_tran 1/1 407 569 .. 1 182 [. 54.2 1.6e-14
AAL_decarboxy 1/1 576 597 .. 211 236 .] 4.8 3.1
Alignments of top-scoring domains:
Peptidase_S26: domain 1 of 1, from 1 to 19: score 4.6, E = 2
*->MnkeqaavdsldkktlkKkakkplnfewgksiai<-*
M+k q +++Kk fe+g+++++
T10H9.5 1 MGKLQ---------VIEKK------FEFGFRVFY 19
DUF230: domain 1 of 1, from 69 to 94: score 4.1, E = 8.7
*->qeikppiiipfviplgliaviflila<-*
++++p ++++f+i++++ + l++a
T10H9.5 69 EKDEPKFWHIFWIASLCYVGLCLLMA 94
MBOAT: domain 1 of 1, from 56 to 104: score 5.3, E = 1.5
*->lllilerafrrlfrlrkllrsrkrllllnvifwfraflgtslfflly
+++i+ ++++ l + +++++++++++ + ++++++ + ff++
T10H9.5 56 TGVIPGKFYVALIEKDEPKFWHIFWIASLCYVGLCLLMALMNFFSWC 102
lv<-*
l+
T10H9.5 103 LY 104
Cdc37: domain 1 of 1, from 280 to 288: score 2.0, E = 9.5
*->ilmqYileL<-*
++m+Yil+L
T10H9.5 280 GCMSYILQL 288
PRK: domain 1 of 1, from 412 to 427: score 5.7, E = 1.3
*->vIGvaGsSGaGKTtvarri<-*
++G+SG GKT+ +r i
T10H9.5 412 ---ITGDSGIGKTSLMRVI 427
AAA: domain 1 of 1, from 409 to 428: score 5.1, E = 1.7
*->gvLLyGPPGtGKTlLAkavA<-*
+L G G GKT+L + +A
T10H9.5 409 TLLITGDSGIGKTSLMRVIA 428
RNA_helicase: domain 1 of 1, from 410 to 430: score 4.7, E = 2.9
*->vylhGaPGqGKSllanvlara<-*
++++G +G+GK+ l+ v+a +
T10H9.5 410 LLITGDSGIGKTSLMRVIADM 430
ABC_tran: domain 1 of 1, from 407 to 569: score 54.2, E = 1.6e-14
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
+++l ++G +G GK++L+++i+ ++p + + + +d
T10H9.5 407 NKTLLITGDSGIGKTSLMRVIADMWPHQGILKKHFK-K--TDAY--- 447
erlerlrknigvvfQdptlfpnpeltvreniafglrls..lglskdeqrd
+++Q p++ + +l++ ++++f+++ ++++ +++e++
T10H9.5 448 -----------FLPQKPYFPVG-RLSLKQQLVFPAEENeeKSGNDEEIVR 485
rlkkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklL
l + + +lL +g d++ ++ tLS G++QR++ AR++l +p++
T10H9.5 486 ILHELKLGHLLPIVGNIHDSVDFEWQETLSPGEQQRLCFARMILAEPTVA 535
lLDEPTagLDpasraqllellrelrqqggTvllitHd<-*
+LDE T + D + +++e lr++ ++T + + H+
T10H9.5 536 FLDESTCNVDEGMENAMYEMLRKH---SITYISVGHR 569
AAL_decarboxy: domain 1 of 1, from 576 to 597: score 4.8, E = 3.1
*->heldlqLPkqNiqtrdFlradLdpen<-*
h+++l+ P +++ Fl+ ++++
T10H9.5 576 HDFELRIP----SSSSFLFHEIHNQK 597