hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T11B7.4b
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Query:  T11B7.4b  CE23977    status:Partially_confirmed TR:Q9TW26 protein_id:CAB54312.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
LIM           LIM domain                                147.0    2.9e-40   4
DUF678        Protein of unknown function (DUF678)        4.8        5.5   1
Polyoma_coat2 Polyomavirus coat protein                   2.5        5.1   1
BK_channel_a  Calcium-activated BK potassium channel      2.1        3.3   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
DUF678          1/1     162   183 ..    63    84 ..     4.8      5.5
LIM             1/4     149   196 ..     1    53 [.    25.9  7.1e-06
Polyoma_coat2   1/1     864   882 ..   335   353 .]     2.5      5.1
BK_channel_a    1/1     970   982 ..     1    14 [.     2.1      3.3
LIM             2/4    1180  1238 ..     1    62 []    41.8  2.2e-10
LIM             3/4    1241  1297 ..     1    62 []    59.5  2.1e-15
LIM             4/4    1300  1350 ..     1    54 [.    43.8  5.9e-11

Alignments of top-scoring domains:
DUF678: domain 1 of 1, from 162 to 183: score 4.8, E = 5.5
                   *->kvagkvFggntLaCaACGSsLc<-*
                      + agk   g+ L+Ca CG sL+
    T11B7.4b   162    RAAGKNLHGDCLSCATCGNSLR    183

LIM: domain 1 of 4, from 149 to 196: score 25.9, E = 7.1e-06
                   *->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefyekdg
                      C+ C +pI   ++ r+a+ k+ H +C+ Ca+Cg  L + + ++++++
    T11B7.4b   149    CFMCTRPIL-GVMARAAG-KNLHGDCLSCATCGNSLRNVG-HHFIED 192

                   skelYC<-*
                    k +YC
    T11B7.4b   193 -K-FYC    196

Polyoma_coat2: domain 1 of 1, from 864 to 882: score 2.5, E = 5.1
                   *->DiTPtWeayleElekekkk<-*
                      DiT+t   ++eE+  ++++
    T11B7.4b   864    DITSTFDIEEEEVDVVQDR    882

BK_channel_a: domain 1 of 1, from 970 to 982: score 2.1, E = 3.3
                   *->EivFLHnisPdLEL<-*
                       iv+L n+ P+LEL
    T11B7.4b   970    -IVYLQNLRPELEL    982

LIM: domain 2 of 4, from 1180 to 1238: score 41.8, E = 2.2e-10
                   *->CagCnkpIydrevvrralnkvwHpeCFrCav..CgkpLtegdefyek
                      C  C+++I++++v+  a +k+w+pe+F+Ca ++C++ L e + f+e
    T11B7.4b  1180    CESCKQQIRGAFVL--ATGKSWCPEHFVCANssCRRRLLECG-FVEE 1223

                   dgskelYCkhDyyklfg<-*
                   dg +   C++++++  +
    T11B7.4b  1224 DG-Q-KFCESCFEQHIA    1238

LIM: domain 3 of 4, from 1241 to 1297: score 59.5, E = 2.1e-15
                   *->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefyekdg
                      C +C kpI + ++   al k wHp CF+Ca+C+kp++++  fy+  g
    T11B7.4b  1241    CNKCSKPIISDCLN--ALQKKWHPTCFTCAHCQKPFGNSA-FYLEQG 1284

                   skelYCkhDyyklfg<-*
                      +YC++D   lf
    T11B7.4b  1285 -L-PYCEQDWNALFT    1297

LIM: domain 4 of 4, from 1300 to 1350: score 43.8, E = 5.9e-11
                   *->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefyekdg
                      C  C  pI++ ++ + al++++H +CF+Ca C+++L+  + f+ k+g
    T11B7.4b  1300    CVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGES-FFAKNG 1345

                   skelYCk<-*
                    + + C+
    T11B7.4b  1346 -Q-PFCR    1350

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