Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T11F9.2a
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Query: T11F9.2a CE31993 status:Partially_confirmed
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Zip ZIP Zinc transporter 114.4 2.1e-30 1
DUF580 Protein of unknown function, DUF580 4.9 1.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF580 1/1 75 125 .. 302 360 .. 4.9 1.6
Zip 1/1 40 498 .. 1 363 [] 114.4 2.1e-30
Alignments of top-scoring domains:
DUF580: domain 1 of 1, from 75 to 125: score 4.9, E = 1.6
*->fiLFLgkllvglvtglvtfiwldlrykdyvinkvyngLNYyvvPlli
+++FL ++ +g+++g ++fi+l +++++ + + Y +l+i
T11F9.2a 75 IMTFLVAVGIGALSGSTIFIML----PQAFHLTSFEHFEYHTKSLII 117
vlsyavallAfi<-*
al+Af+
T11F9.2a 118 ----LCALYAFF 125
Zip: domain 1 of 1, from 40 to 498: score 114.4, E = 2.1e-30
*->lllkiyaifalllisligvllplllplmksavatttesdlraskkll
+ + +++ ++ +s+ + l+ lllp++++ + + +++
T11F9.2a 40 WQTWGIGFAIVSGCSFSAPLGILLLPCLSK----------SLYERIM 76
sfllaFAaGvlLgtaflHLLPealealeslclehtpwhdfpfhpdssnag
+fl+a ++G l g +++ +LP a++ s ++ ++++ +
T11F9.2a 77 TFLVAVGIGALSGSTIFIMLPQAFHLT-SFEHFEYHT-----------KS 114
livllGfllfllvEklvtllkerkgghghshdhehshte.......eerh
li+l+++++f++v++++ ++ + ++++ +h+++ + + +++
T11F9.2a 115 LIILCALYAFFTVDRMLQYIL---EFRRRRQTKRRIHAStiaslmnTPTT 161
hkkssseeaseehgsseapeessekekesdsqelelh.eqsghseele.e
+++ ++++ ee+ ++ +p + ++ +q + lh+++++ +e ++++
T11F9.2a 162 KRRDNGHNTTEETIVPSEPPTITR------LQVPDLHnHHRFRRESELsD 205
ssae.hsdh.ket.....................................
++ ++ ++++ + ++ + +++ ++ +++++ +++ ++ + +
T11F9.2a 206 VERTeQQEKeMAElandlemaltnnvlartfstrrrvavvsgglddiefr 255
..................................................
+++ +++++++++++ + +++ +++ ++ +++++++ + + ++++++
T11F9.2a 256 spklsshhtngntsqfldvinnefhrrmtplssrpgspvtinveepkesy 305
.......................................rviayllllgl
+ ++++++++ ++++++++ + + + +++ ++ + +ay++++g
T11F9.2a 306 emkqksekpglnhqdnsdsmsvsirvvekkviepaamevASVAYMIIFGS 355
ilHnffdGLAiGasfssstslgistflAvlfHelphglGlgaiLlqagfs
+ nf+dG+++Ga+fs + g+s+ +Av+ +++p +lG aiL+++g+
T11F9.2a 356 SANNFVDGMSMGAAFSDNLLRGLSIGIAVISQQFPQELGTLAILVKSGLG 405
rkkAvfPWllnlllfAltapiGialGllissgasygasggadiasgilla
kk + l+n + +++++G +G + + d +++a
T11F9.2a 406 LKKTL---LFNM-VPIVLSFLGFSIGV--------MLDSVDDSYDEYIFA 443
fsAGtFlYvAlvellPeelassks.n.ssgqsdlklsllqllalllGfal
+s G+ +Y+ l l+Pe+++s ++ ++++ ++ s+lq ++l+G ++
T11F9.2a 444 ISSGMYMYIFLGTLIPEIRESTNElIkENLAESILVSILQACGILFGTTF 493
Mllia<-*
M++++
T11F9.2a 494 MYFMS 498