Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T12A2.15a
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Query: T12A2.15a CE30392 status:Partially_confirmed TR:O76835 protein_id:AAC24452.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
C2 C2 domain 197.9 1.2e-55 3
CorA CorA-like Mg2+ transporter protein 3.3 4.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CorA 1/1 25 53 .. 366 398 .] 3.3 4.3
C2 1/3 278 362 .. 1 88 [] 102.1 5.1e-28
C2 2/3 425 503 .. 1 88 [] 48.2 1.9e-12
C2 3/3 597 690 .. 1 88 [] 53.1 7.4e-14
Alignments of top-scoring domains:
CorA: domain 1 of 1, from 25 to 53: score 3.3, E = 4.3
*->kygyplvlglmailclvlylvllsyfrrKgwlg<-*
k+ y +v++l++i++ v y++rK+ +
T12A2.15a 25 KWDYSFVWVLIIIIASVTKS----YLWRKRERR 53
C2: domain 1 of 3, from 278 to 362: score 102.1, E = 5.1e-28
*->LrVtvieAknLppkDk...kngksDPYVkvslggdpkdqkkkTkvik
+r+++ieAknL ++D + k+gksDPY+++++g q +kT++i
T12A2.15a 278 VRLKIIEAKNLENRDIsfiKKGKSDPYAEIQVGS----QFFKTRTID 320
ktlNPvWNEtFtFevpppdlqetLeitVyDydrfgrddflGevs<-*
++lNP+WNE F+ v+ +d+q+ L+i+++D+d + d+ lG+ s
T12A2.15a 321 DDLNPIWNEYFEAVVDQADGQK-LRIELFDEDQGK-DEELGRLS 362
C2: domain 2 of 3, from 425 to 503: score 48.2, E = 1.9e-12
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqkkkTkvikktl
L V++ + +Lp ++ ++P+V+vslg+ +++T v+ kt
T12A2.15a 425 LMVYIDSVADLPYPK-SKLEPSPFVEVSLGK----ETQRTPVKVKTV 466
NPvWNEtFtFevpppdlqetLeitVyDydrfgrddflGevs<-*
NP + +F F v + ++qe L+++ D+++ + lG +
T12A2.15a 467 NPLFQSKFLFFVRHLEGQE-LKFEAVDDGTRR---SLGSLN 503
C2: domain 3 of 3, from 597 to 690: score 53.1, E = 7.4e-14
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqk....kkTkvi
L++ +i++++L+ D k+ ++PYV v+l ++ +k+ +kkT ++
T12A2.15a 597 LKIALIRCRDLMTFD-KKDQCNPYVSVKLVALDG-NKevfkKKTPTA 641
kktlNPvWNEtFtFevpppdlqe.tLeitVyDydrfgr...ddflGevs<
k+t++P ++ + +++++p dl +++++i V+D+ +g +lG+ +
T12A2.15a 642 KNTRHPHFDNHVEIDINPSDLLNhKVVINVKDDTNYGTfvaKPVLGCLE 690
-*
T12A2.15a - -