Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T12B3.3
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Query: T12B3.3 CE21178 phosphodiesterase status:Partially_confirmed TR:Q9UAW8 protein_id:AAD14735.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GDPD Glycerophosphoryl diester phosphodiesterase 279.8 1.9e-82 1
PNTB NAD(P) transhydrogenase beta subunit 2.6 6.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PNTB 1/1 173 192 .. 490 510 .] 2.6 6.7
GDPD 1/1 68 333 .. 1 315 [] 279.8 1.9e-82
Alignments of top-scoring domains:
PNTB: domain 1 of 1, from 173 to 192: score 2.6, E = 6.7
*->eNTqMLFGDAKKtveeileel<-*
+NT+MLF D K++ e++ ++
T12B3.3 173 NNTRMLF-DVKDSDNELVDQI 192
GDPD: domain 1 of 1, from 68 to 333: score 279.8, E = 1.9e-82
*->HRGasgsaPlpENTllafrkAaeaGADgvElDVqlTKDGvpVvmHDe
HRGa++s+P EN+++ f++A+++GAD++E+DV lTKDG+ V+mHD+
T12B3.3 68 HRGAPKSFP--ENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDD 112
tLdRttdgagsfesvgglrvkdlTleeLkkldltedlldllllhSvdstf
+LdRttd++g +++d+T +eL ++d
T12B3.3 113 DLDRTTDMKG--------PIRDKTRAELDRCD------------------ 136
eagsgrsrpfsgervplwsgKnrheeafpfpTLeevleev.......iqd
+++ ++r +g++++l++ ++++++p +e+v++++ +++++ ++d
T12B3.3 137 -ISATFKRTAPGDHCRLAT-----VSRERVPDMEDVVKWAvenntrmLFD 180
vgfnieikikiydeqieveevfeivkdlnasvddilkkgvlkkadprrvi
v+++ + ++++ + + +++ +++k++++s+++++ + ++kk+d ++++
T12B3.3 181 VKDSDNELVDQIANLFQKYN--LYDKAIVCSFFPWVVY-RIKKGDQKILT 227
fssFdpdslkrlrelapp.rmelplvfLfv.rdealdpekDpRgsllera
+ +++ +++++++ ++ ++r++ p+ +Lf+ d+a+ + l++++
T12B3.3 228 GLTWRLKFWSYHDIENIRpRYSGPKQMLFEmIDVAHVW------LLKKVT 271
arfagapallgeialvaeglgpwkmiIekdpdlvkraharGlkVfvWTvn
+++ga+ ll ++ ++ + l++ ++rG++V vWTvn
T12B3.3 272 PWYLGADLLLTNNLDISQA-------------LIMDQRRRGMRVAVWTVN 308
nedeeemyrllklGVDgviTDrpdllr<-*
++ +em+++lk +++TD+p+l++
T12B3.3 309 DM--AEMHWMLKTLNIPILTDYPELTT 333