Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T12B3.3
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Query:  T12B3.3  CE21178   phosphodiesterase status:Partially_confirmed TR:Q9UAW8 protein_id:AAD14735.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
GDPD     Glycerophosphoryl diester phosphodiesterase    279.8    1.9e-82   1
PNTB     NAD(P) transhydrogenase beta subunit             2.6        6.7   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PNTB       1/1     173   192 ..   490   510 .]     2.6      6.7
GDPD       1/1      68   333 ..     1   315 []   279.8  1.9e-82

Alignments of top-scoring domains:
PNTB: domain 1 of 1, from 173 to 192: score 2.6, E = 6.7
                   *->eNTqMLFGDAKKtveeileel<-*
                      +NT+MLF D K++  e++ ++
     T12B3.3   173    NNTRMLF-DVKDSDNELVDQI    192

GDPD: domain 1 of 1, from 68 to 333: score 279.8, E = 1.9e-82
                   *->HRGasgsaPlpENTllafrkAaeaGADgvElDVqlTKDGvpVvmHDe
                      HRGa++s+P  EN+++ f++A+++GAD++E+DV lTKDG+ V+mHD+
     T12B3.3    68    HRGAPKSFP--ENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDD 112

                   tLdRttdgagsfesvgglrvkdlTleeLkkldltedlldllllhSvdstf
                   +LdRttd++g        +++d+T +eL ++d
     T12B3.3   113 DLDRTTDMKG--------PIRDKTRAELDRCD------------------ 136

                   eagsgrsrpfsgervplwsgKnrheeafpfpTLeevleev.......iqd
                    +++ ++r  +g++++l++     ++++++p +e+v++++ +++++ ++d
     T12B3.3   137 -ISATFKRTAPGDHCRLAT-----VSRERVPDMEDVVKWAvenntrmLFD 180

                   vgfnieikikiydeqieveevfeivkdlnasvddilkkgvlkkadprrvi
                   v+++ + ++++  + + +++  +++k++++s+++++ + ++kk+d ++++
     T12B3.3   181 VKDSDNELVDQIANLFQKYN--LYDKAIVCSFFPWVVY-RIKKGDQKILT 227

                   fssFdpdslkrlrelapp.rmelplvfLfv.rdealdpekDpRgsllera
                   + +++ +++++++ ++ ++r++ p+ +Lf+  d+a+ +       l++++
     T12B3.3   228 GLTWRLKFWSYHDIENIRpRYSGPKQMLFEmIDVAHVW------LLKKVT 271

                   arfagapallgeialvaeglgpwkmiIekdpdlvkraharGlkVfvWTvn
                    +++ga+ ll ++  ++ +             l++  ++rG++V vWTvn
     T12B3.3   272 PWYLGADLLLTNNLDISQA-------------LIMDQRRRGMRVAVWTVN 308

                   nedeeemyrllklGVDgviTDrpdllr<-*
                   ++  +em+++lk    +++TD+p+l++
     T12B3.3   309 DM--AEMHWMLKTLNIPILTDYPELTT    333



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