hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T12D8.2
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Query:  T12D8.2  CE16399   RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Confirmed TR:O45781 protein_id:CAB03342.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
rrm      RNA recognition motif. (a.k.a. RRM, RBD, or     48.2      1e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
rrm        1/2       8    16 ..     1     9 [.     1.2       68
rrm        2/2      40    85 ..    27    77 .]    47.0  2.3e-12

Alignments of top-scoring domains:
rrm: domain 1 of 2, from 8 to 16: score 1.2, E = 68
                   *->lfVgNLppd<-*
                       f+g+Lp+d
     T12D8.2     8    AFIGGLPYD    16

rrm: domain 2 of 2, from 40 to 85: score 47.0, E = 2.3e-12
                   *->sikivkDhiekpketgkskGfaFVeFeseedAekAlealnGkelggr
                      +i +v+D     +  g+ kGfa+V+Fe+e +++ A++ lnG  +g+r
     T12D8.2    40    DIHLVHD-----RDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNR 81

                   klrv<-*
                   +l+v
     T12D8.2    82 VLKV    85

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