Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T12E12.2
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Query: T12E12.2 CE13585 status:Partially_confirmed TR:Q22430 protein_id:AAB03120.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
chromo 'chromo' (CHRromatin Organization MOd 26.3 3.1e-06 1
Glycos_transf_1 Glycosyl transferases group 1 4.0 7.9 1
Topoisomerase_I Eukaryotic DNA topoisomerase I, catal 3.7 4.8 1
SBP_bac_3 Bacterial extracellular solute-bindin 2.4 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
chromo 1/1 47 71 .. 26 50 .] 26.3 3.1e-06
SBP_bac_3 1/1 296 326 .. 203 233 .] 2.4 9.3
Glycos_transf_1 1/1 754 776 .. 163 191 .] 4.0 7.9
Topoisomerase_I 1/1 753 778 .. 259 284 .] 3.7 4.8
Alignments of top-scoring domains:
chromo: domain 1 of 1, from 47 to 71: score 26.3, E = 3.1e-06
*->GkleYlvKWkGysdseNTWEpeenI<-*
+k+ Ylv W+Gy+ +e TWEpeen+
T12E12.2 47 SKYAYLVHWRGYDWKERTWEPEENL 71
SBP_bac_3: domain 1 of 1, from 296 to 326: score 2.4, E = 9.3
*->peLldkvNkaLaelkad.GtlkkiseKwgfgt<-*
+e ++++ ka+++ ++ +++k ++K+ +
T12E12.2 296 QETKKALQKAIESAREEcEEIEKTIKKY-PLQ 326
Glycos_transf_1: domain 1 of 1, from 754 to 776: score 4.0, E = 7.9
*->eaiekllkdeekkdllelrkrlgenarkr<-*
e+i++l +++ +++k+++e+++ r
T12E12.2 754 EKIDELKTSQ------KRYKKMIEEGKGR 776
Topoisomerase_I: domain 1 of 1, from 753 to 778: score 3.7, E = 4.8
*->dekidalklqiielkkaldeakkkiv<-*
+ekid+lk +++kk++ e k +v
T12E12.2 753 TEKIDELKTSQKRYKKMIEEGKGRLV 778