hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T13C5.5a
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Query:  T13C5.5a  CE04946  locus:bca-1 carbonic anhydrase status:Confirmed TR:Q22460 protein_id:AAK39291.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Pro_CA          Carbonic anhydrase                       77.4      2e-21   2
DUF62           Protein of unknown function DUF62         4.5        2.9   1
Isochorismatase Isochorismatase family                    3.6        4.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF62             1/1      78   101 ..   254   279 .]     4.5      2.9
Isochorismatase   1/1      72   104 ..   122   153 ..     3.6      4.6
Pro_CA            1/2      23   111 ..    13    95 ..    57.9  9.8e-16
Pro_CA            2/2     182   223 ..   140   182 .]    19.5  0.00013

Alignments of top-scoring domains:
DUF62: domain 1 of 1, from 78 to 101: score 4.5, E = 2.9
                   *->EiavnmDnAaeklnvKeGddeievil<-*
                      E++vn   Aa  l vK+G+  i+ i+
    T13C5.5a    78    EVSVNTEPAALELAVKRGG--IRHIV    101

Isochorismatase: domain 1 of 1, from 72 to 104: score 3.6, E = 4.6
                   *->iYSAFfahvcvlnTd..LdllLRelGidqLiitG<-*
                      +Y+AF   v v  ++  L+l++++ Gi++++++G
    T13C5.5a    72    NYGAFS-EVSVNTEPaaLELAVKRGGIRHIVVCG    104

Pro_CA: domain 1 of 2, from 23 to 111: score 57.9, E = 9.8e-16
                   *->FkeLAkgQsPkyLviaCSDSRVcPslvtqlePGElFViRNvANlVP.
                      F+e +   sP    ++C DSR  P   tq++ G+ FV+RN++N++P+
    T13C5.5a    23    FEEIKNNPSPTAVMFTCMDSRMLPTRFTQSQVGDMFVVRNAGNMIPd 69

                   .....pydknkyaGvGAaiEYAVaaLKVehIVVcGHSnCGGI<-*
                    ++ +++  +    + Aa E AV    + hIVVcGHS C +I
    T13C5.5a    70 apnygAFSEVSVNTEPAALELAVKRGGIRHIVVCGHSDCKAI    111

Pro_CA: domain 2 of 2, from 182 to 223: score 19.5, E = 0.00013
                   *->talekEnVnvqLaNLlTyPfVReglenGqkLaLhGWvYDvvsG<-*
                      + l  +nV+ qL N + + f +e le G +L +hG   D+ +G
    T13C5.5a   182    DKLSQINVLQQLINICSHEFLKEYLESG-RLHIHGMWFDIYKG    223

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