hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T13C5.3
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Query:  T13C5.3  CE04944    status:Predicted TR:Q22457 protein_id:AAK39289.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF282   Caenorhabditis protein of unknown function,    217.8    7.4e-66   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF282     1/2      29   109 ..     1    87 [.   175.7    5e-53
DUF282     2/2     110   140 ..   428   459 .]    41.8  3.1e-12

Alignments of top-scoring domains:
DUF282: domain 1 of 2, from 29 to 109: score 175.7, E = 5e-53
                   *->CtvCspvYnTgCmGfGmPslsdWCaiAAevpVtYtlGaVlaltPglP
                      C+vC++vY+T+CmGfG+P+l+++C++AAe++++Y+lGaV+al+P++P
     T13C5.3    29    CNVCQKVYDTACMGFGIPNLLTGCPTAAEAGIEYALGAVIALFPFVP 75

                   adsCSTvvvCPtGTtlfydvfGtelpERGNNYGpspvvaw<-*
                   a++CSTvvvCP++Ttl+y++fG+++p      Gpsp+vaw
     T13C5.3    76 AGACSTVVVCPPTTTLQYITFGIQTP------GPSPAVAW    109

DUF282: domain 2 of 2, from 110 to 140: score 41.8, E = 3.1e-12
                   *->CeETGadaGtWfTgIeadDfsqelssltCrni<-*
                      CeE+G+daGtW+Tg++++ f++el+sl+C +i
     T13C5.3   110    CEESGPDAGTWYTGASFL-FRVELASLACLPI    140

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