Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T13F2.1
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Query: T13F2.1 CE25113 locus:fat-4 cytochrome B5 containing fusion protein status:Confirmed TR:Q9XTB7 protein_id:CAB61031.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FA_desaturase Fatty acid desaturase 227.1 5.7e-65 1
heme_1 Heme/Steroid binding domain 56.1 1.8e-14 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
heme_1 1/1 3 134 .. 7 78 .] 56.1 1.8e-14
FA_desaturase 1/1 156 409 .. 1 296 [] 227.1 5.7e-65
Alignments of top-scoring domains:
heme_1: domain 1 of 1, from 3 to 134: score 56.1, E = 1.8e-14
*->lrehdkkdgrilvainG.kVYDltrflafhpgGasallafaGrDaTa
lre++ +++++++i+G++++ + l++hpgG sa+++++++DaT+
T13F2.1 3 LREQE--HEPFFIKIDGkWCQIDDAVLRSHPGG-SAITTYKNMDATT 46
af................................................
f++ ++++++ + ++ +++ ++++++ ++ ++++ ++ ++ + ++ +
T13F2.1 47 VFhtfhtgskeayqwltelkkecptqepeipdikddpikgiddvnmgtfn 96
.............klaahreeaaeellek..lykvGrvd<-*
+++++ + +++ ++ ++r ++ae+l++ ++l++++++
T13F2.1 97 isekrsaqinksfTDLRMR-VRAEGLMDGspLFYIRKIL 134
FA_desaturase: domain 1 of 1, from 156 to 409: score 227.1, E = 5.7e-65
*->awllggtaltglfvtsGLGiTaggHdLcgHrsfsknrwlndlvGhil
a+l+g +++++++ ++H+ ++H++ +knr++ndl+ +++
T13F2.1 156 AILMGVAWQQLGW---------LIHE-FAHHQLFKNRYYNDLASYFV 192
lalllgvpyqgsiieWrrsHrrGHHrytntdekDPdsaprgffavsw.pk
+++l+g++ +g W+ +H++ HH++tn++++D d + +f a++ +++
T13F2.1 193 GNFLQGFSSGG----WKEQHNV-HHAATNVVGRDGDLDLVPFYATVAeHL 237
.slsvhyekkvllfshvgwllvlklplyfllaw.plylakgfpGkYdrkk
++ + ++ ++ +l++ ++ ++++++++l+l++
T13F2.1 238 nN---------YSQDSWVMTLFRWQHVHWTFMLpFLRLSWLL-------- 270
ldshdlpasplfrfqa.aeryyvllsllglfalptllplllwglgglwgv
++++++s + + +++++r+ + + +gl +++++ ++ l +l+ + +
T13F2.1 271 --QSIIFVSQMPTHYYdYYRNTAIYEQVGLSLHWAWSLGQLYFLPDWSTR 318
lkfylvpylvvgfwlglvnsylaHyggerklPppfappdYdgens.kewd
++f+lv+ lv+gf l +v+ +Hy e+ + +++s+++ +
T13F2.1 319 IMFFLVSHLVGGFLLSHVVT-FNHYSVEK-------F----ALSSnIMSN 356
wdrgqlsgtvdrdygkllnllfhgegnyHveHHlFPtiPyynlpeatpai
++ q+++t++ ++g + ++ +g++ny++eHHlFPt+P++nl ++p++
T13F2.1 357 YACLQIMTTRNMRPG-RFIDWLWGGLNYQIEHHLFPTMPRHNLNTVMPLV 405
kptl<-*
k++
T13F2.1 406 KEFA 409