Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T13F2.11
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Query:  T13F2.11  CE13638  locus:msp-78 major sperm protein status:Confirmed TR:Q94053 protein_id:CAB03362.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
MSP_domain MSP (Major sperm protein) domain             126.5      8e-36   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
MSP_domain   1/1       9   126 ..     1   138 []   126.5    8e-36

Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 9 to 126: score 126.5, E = 8e-36
                   *->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
                      +++++P +++ vf +  p+d++ +t++++++N s +ri + +KtTn+
    T13F2.11     9    DIQTQPGTKI-VFNA--PYDDK-HTYHIKVINSSARRIGYGIKTTNM 51

                   klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
                   k++ V+P++G+l+P+e v +av+      +++f+  ++  d+n+d+++++
    T13F2.11    52 KRLGVDPPCGVLDPKEAVLLAVS------CDAFAFGQE--DTNNDRITIE 93

                   yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
                   ++++p+++a+      +++ ++++ +++  v+++++p++++
    T13F2.11    94 WTNTPDGAAK------QFRREWFQGDGM--VRRKNLPIEYN    126



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