Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T13H5.7
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Query: T13H5.7 CE28960 locus:rnh-2 status:Confirmed SW:Q9U6P6 protein_id:CAC70103.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RNase_HII Ribonuclease HII 363.8 1.8e-105 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RNase_HII 1/1 24 239 .. 1 229 [] 363.8 1.8e-105
Alignments of top-scoring domains:
RNase_HII: domain 1 of 1, from 24 to 239: score 363.8, E = 1.8e-105
*->aGiDEvGRGPvlGPlVvAAvilpperedeveLkklGvkDSKkLsekk
+GiDE+GRGPvlGP+V+AA+i+p +++ veLk+lGv+DSK L+e k
T13H5.7 24 LGIDEAGRGPVLGPMVYAAAISPLDQN--VELKNLGVDDSKALNEAK 68
ReeLaelIkedeeLtkvgykiirietrklsaenikyneaeaneinlneil
Ree++++++ede+ +++ii++++r+ls+e i++++ ++++++lne++
T13H5.7 69 REEIFNKMNEDED----IQQIIAYALRCLSPELISCSMLKRQKYSLNEVS 114
halilamirnavqklgvkpdieilVDgvtpfgKkypkslqmkleaifkeR
h++ +++ir ++++++v++ ei+VD+v+p ++++q kle+ f++
T13H5.7 115 HEAAITLIR-DALACNVNVV-EIKVDTVGP-----KATYQAKLEKLFPG- 156
ikitvehKADskylsVAAASIiAKVtRDr..emlellkrfpgYmgldkGs
i+i+v++KADs++++V+AASI AKVtRD++ +++++++++++++++ +Gs
T13H5.7 157 ISICVTEKADSLFPIVSAASIAAKVTRDSrlRNWQFREKNIKVPDAGYGS 206
GYptDphteallklgatpvfGwlpdlhRrsFktv<-*
GYp+Dp+t+++l+l ++pvfG +++l+R s+kt+
T13H5.7 207 GYPGDPNTKKFLQLSVEPVFG-FCSLVRSSWKTA 239