hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T14B4.1
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Query:  T14B4.1  CE32068   rRNA methylase status:Partially_confirmed TR:Q22484 protein_id:AAK31550.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
SpoU_methylase SpoU rRNA Methylase family                49.0    1.5e-11   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
SpoU_methylase   1/1     992  1135 ..     1   152 []    49.0  1.5e-11

Alignments of top-scoring domains:
SpoU_methylase: domain 1 of 1, from 992 to 1135: score 49.0, E = 1.5e-11
                   *->dlvvvLdeveiPhNiGaIiRtcaalGvdgivivdsdgaalldrrlrr
                      +l vv   v +P+N+G+I Rt+  +Gvd +v+ d  + +  d+
     T14B4.1   992    SLIVVASLVDKPNNLGGICRTSEIFGVDTLVVAD--VLVAQDANFKA 1036

                   aslGyaesvpv..vrvdnleealeklkelsgiwllttsgdanatlldyed
                    s+ + +++++++v+ +nl+  l+ l+  +g+++++  ++++++++ + d
     T14B4.1  1037 LSMSSENWQKIegVKRTNLLPYLQNLRA-NGYTVIA--AEQTTDSVMMHD 1083

                   aakleaykerlaLvfGsEktGlPsqlalekadqrirIPMtgkvrSLNvSv
                     +      + ++v+G Ek+G+ + ++l++ dq ++I  +g +rSLNv v
     T14B4.1  1084 FVF----PKKAVIVMGDEKEGV-PVNLLRAVDQTVEIKQVGHTRSLNVHV 1128

                   Avgilly<-*
                   ++++ +
     T14B4.1  1129 TAALMIA    1135

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