Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T14D7.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T14D7.1 CE23985 serine-pyruvate aminotransferase status:Partially_confirmed TR:Q94055 protein_id:CAB03364.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
aminotran_5 Aminotransferase class-V 126.6 2.6e-34 1
SPOR Sporulation related repeat 7.0 5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SPOR 1/1 307 330 .. 13 36 .] 7.0 5
aminotran_5 1/1 106 392 .. 71 378 .] 126.6 2.6e-34
Alignments of top-scoring domains:
SPOR: domain 1 of 1, from 307 to 330: score 7.0, E = 5
*->ssrenAerlqakLkaaGysavvis<-*
+ ++nA+ l a Lk++G+ ++v+
T14D7.1 307 RHKDNAQVLYATLKKHGLEPFVVD 330
aminotran_5: domain 1 of 1, from 106 to 392: score 126.6, E = 2.6e-34
*->aaissllpglkatkrhiitssvehpsvlaaaealefgqGyrVtvlrl
a++++l pg+k ++++ + ++ +aa+ a G +V +
T14D7.1 106 AMVNLLEPGDK-----FLVVEIGLWGQRAADLANR--MGIEVKKI-- 143
pvkddeGrldedlealeaalnpdtalVsimhvnNETGviqPikeiselah
++++ ++ ++++++a ++ ++ lV++ ++++TGv qP++ i+++++
T14D7.1 144 TAPQGQAVP--VEDIRKAIADYKPNLVFVCQGDSSTGVAQPLETIGDACR 191
ersgalfhvDaVqalGkipidvdalgiDvlsaSsHKihgPPkGvGalyvR
e+ galf+vD V++lG++p+ d+l++D ++++ +K++++P+G+ ++++
T14D7.1 192 EH-GALFLVDTVASLGGTPFAADDLKVDCVYSATQKVLNAPPGLAPISFS 240
rgvrfrplLrgggqErgaragtenvpgdiagmgkaaelrntpptfpvyli
+++ +++ +++ +++++ + + + +g+++el +++t p++ +
T14D7.1 241 -DRAMEKIRNRKQRVASFYFDAIELGN---YWGCDGELKRYHHTAPISTV 286
gaLrekLkegllaglehkwvrgreqkaarlpridnlgwRGfeliegeail
+aLr +L+++ ++g+ +++ r++ + +++ ++ g +e+++++ l
T14D7.1 287 YALRAALSAIAKEGIDESIQRHKDNAQVLYATLKKHG---LEPFVVDEKL 333
lslantgiaistvGsAcdsgslepshvlramalGpgtrahGKgiRvSlyr
+++ t++ ++ G ++ + ++++ + + +++G++++ +GK+ R+++ +
T14D7.1 334 RLPCLTTVKVPE-GVDWKD-VAGKMMTNGTEIAGGLGATVGKIWRIGTFG 381
yvtTeeevdrl<-*
++ + ++ +
T14D7.1 382 INSNSTKIENV 392