Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T14G10.5
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Query: T14G10.5 CE06451 protein transport protein status:Confirmed SW:Q22498 protein_id:CAA93095.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Adaptin_N Adaptin N terminal region 599.0 2.8e-176 1
HEAT_PBS PBS lyase HEAT-like repeat 22.6 0.00031 5
DUF130 Domain of unknown function DUF130 5.5 0.93 1
PEP-utilizers PEP-utilizing enzyme, mobile domain 4.9 6.9 1
OapA Opacity-associated protein A 4.2 1.5 1
MethyltransfD12 D12 class N6 adenine-specific DNA met 3.3 6.7 1
2-Hacid_DH_C D-isomer specific 2-hydroxyacid dehyd 2.4 1.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PEP-utilizers 1/1 87 111 .. 13 37 .. 4.9 6.9
HEAT_PBS 1/5 116 142 .. 1 27 [] 5.1 20
HEAT_PBS 2/5 261 293 .. 1 27 [] 5.7 13
HEAT_PBS 3/5 298 306 .. 1 9 [. 0.1 4.8e+02
MethyltransfD12 1/1 362 381 .. 281 303 .] 3.3 6.7
OapA 1/1 402 410 .. 222 230 .] 4.2 1.5
DUF130 1/1 402 418 .. 122 138 .] 5.5 0.93
HEAT_PBS 4/5 482 514 .. 1 27 [] 11.9 0.27
Adaptin_N 1/1 19 534 .. 1 629 [] 599.0 2.8e-176
HEAT_PBS 5/5 519 544 .. 1 27 [] 0.9 2.8e+02
2-Hacid_DH_C 1/1 632 644 .. 1 13 [. 2.4 1.3
Alignments of top-scoring domains:
PEP-utilizers: domain 1 of 1, from 87 to 111: score 4.9, E = 6.9
*->eeaeaaefgegvILVaeettPsdta<-*
+++e+ae+ ++vI+V+ +t ++t+
T14G10.5 87 AVKELAEVSDDVIIVTSSLTKDMTG 111
HEAT_PBS: domain 1 of 5, from 116 to 142: score 5.1, E = 20
*->vRraAaraLgalgdpeAipaLleaLed<-*
R+aA+raL +++d+ ++ + + +++
T14G10.5 116 YRAAAIRALCKITDTGMLQTIERYMKQ 142
HEAT_PBS: domain 2 of 5, from 261 to 293: score 5.7, E = 13
*->vRraAaraLgalgd......peAipaLleaLed<-*
v ++Aara+ l +++++ + Ai+aL+ + +
T14G10.5 261 VVYEAARAIVSLPQttpseiQPAITALQMCCTS 293
HEAT_PBS: domain 3 of 5, from 298 to 306: score 0.1, E = 4.8e+02
*->vRraAaraL<-*
vR aA+r L
T14G10.5 298 VRFAAVRTL 306
MethyltransfD12: domain 1 of 1, from 362 to 381: score 3.3, E = 6.7
*->lfrelyksYnnfsileveakrti<-*
+++e+ ++ f+i +v+a+r++
T14G10.5 362 FVNEISDE---FKIVVVDAIRSL 381
OapA: domain 1 of 1, from 402 to 410: score 4.2, E = 1.5
*->SDGsYgykK<-*
SDGsY ykK
T14G10.5 402 SDGSYDYKK 410
DUF130: domain 1 of 1, from 402 to 418: score 5.5, E = 0.93
*->aDGSydGKKSeLlqidw<-*
+DGSyd KK+++++i
T14G10.5 402 SDGSYDYKKAIVETIIA 418
HEAT_PBS: domain 4 of 5, from 482 to 514: score 11.9, E = 0.27
*->vRraAaraLgalgd......peAipaLleaLed<-*
vR+aA+ aL+++g++ + +p +L+++L d
T14G10.5 482 VRAAAVTALAKFGAqcvdlrPSIQVLLKRCLLD 514
Adaptin_N: domain 1 of 1, from 19 to 534: score 599.0, E = 2.8e-176
*->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf
+k++++qe++ ++n+ +++ ++k++ +++Kliy+i +G e i
T14G10.5 19 DKTSVLQEAR-AFNETPIN----ARKCCFILSKLIYIIQQG-ESIGR 59
lfaevvklvaskkfelKrlgLRrmVYLylkllaeespDGklhlaiLatnt
+a++ ++ ++k++++K++ LRrmVYL++k+lae+s+D ++i+++++
T14G10.5 60 TEATEAFFGVTKLWQSKDVSLRRMVYLAVKELAEVSDD----VIIVTSSL 105
ikkDLqspNplirglALrtLscirvpelardlapdikkllvdespnpyVR
k+ ++++++l+r+ A+r+L++i + +++ +++++k+++vd +n+ ++
T14G10.5 106 TKD-MTGREDLYRAAAIRALCKITDTGMLQTIERYMKQAIVD--RNSAIS 152
kkAalailkLyrkdpelvernglvedlkelLsDsnpgVvsaavaaldeic
++A++++++L+rk+ e+v+r + ++++e++s++n+ +
T14G10.5 153 SSAIVSSIHLMRKSSEVVRR--WANEVQEAVSSDNH-------------M 187
krnpdllllfrDlklvplLvrfvrlfrklltalsdlnewggnsvpqpfll
+++++l ll++ +r ++r+++++l++ ++ n++++p++
T14G10.5 188 VQYHALALLYQ--------IR--ANDRLAVNKLVQKFSK--NALRSPYAV 225
vkLiklLrlllrkdlvepdpklGlngkdlselltfilqlvntkvelskvq
+ Li r +++++lv+ d +++s+ +tfi++++++k+e++
T14G10.5 226 CYLI---R-IATRCLVDDD-------QPDSSVFTFIESCLRHKSEMV--- 261
hknvsnavlfvliltisdldsapelivlainkLlvlLlssdpnlrYvaLr
++++a+++v++++ + + +p ai++L+++++s++ ++r++a+r
T14G10.5 262 --VYEAARAIVSLPQTTPSEIQP-----AITALQMCCTSPKAAVRFAAVR 304
nlnkivmsekhpskehekavqrhrlkiffclstdddisIrlraLdlLykL
+lnk++m hp+ av++++ +++ ++ d+++sI+++a+++L+k+
T14G10.5 305 TLNKVAM--AHPN-----AVMSCNVDLEKFIT-DPNRSIATLAITTLLKT 346
vdesNvkeivkeLleyveeadndehetfvriavvaiirlaceksnYqypt
+ es+v+++++++ +v+e++ d +++i+vv++ir++c++ yp+
T14G10.5 347 GAESSVERLMQQIAGFVNEIS-D----EFKIVVVDAIRSLCSR----YPR 387
daewcidvLleLLklleggyvvaeaivvqiidiirkyPelreyaVseiit
+++ ++++L ++L+ ++g+y ++ aiv++ii ii+++P+ + +
T14G10.5 388 KHTVMMPFLAKMLR-SDGSYDYKKAIVETIIAIIEENPDAKVAG------ 430
lLaallesiesmpearaaaiWIlGEygelipdiapvlesepsevtpshid
La+l+e+ie+ +e+ + +++l+++g + p++ ++ps
T14G10.5 431 -LAHLCEFIED-CEHDNLSTRVLHLLGREAPKT-----PNPS-------S 466
llreiaenfslenlevraqlLtalvKLyltkpdifqqakvgeiqpveelv
++r+i++++ le+ +vra+++tal+K+++++ d + +++
T14G10.5 467 YIRFIYNRVILESTKVRAAAVTALAKFGAQCVD------------LRPSI 504
qsvlqlalnssdnelElRDRAreylrllslad<-*
q++l+++l +sd +E+RDRA++yl++l++a
T14G10.5 505 QVLLKRCLLDSD--DEVRDRATFYLKMLTEAA 534
HEAT_PBS: domain 5 of 5, from 519 to 544: score 0.9, E = 2.8e+02
*->vRraAaraLgalgdpeAipaLleaLed<-*
vR +A + L +l+ +A ++ ++ d
T14G10.5 519 VRDRATFYLKMLTE-AAEGLIHNFILD 544
[output cut off at A = 10 top alignments]