Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T16A1.1
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Query: T16A1.1 CE28668 status:Partially_confirmed TR:P91452 protein_id:AAB37880.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MATH MATH domain 441.5 7.5e-129 4
NCD2 NAB conserved region 2 (NCD2) 5.4 1.4 1
L51_S25_CI-B8 Mitochondrial ribosomal protein L51 / S 4.5 7.4 1
Pox_VLTF3 Poxvirus Late Transcription Factor VLTF 3.2 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MATH 1/4 27 141 .. 1 159 [] 163.3 4.2e-45
Pox_VLTF3 1/1 259 272 .. 210 223 .] 3.2 6.9
MATH 2/4 169 283 .. 1 159 [] 108.6 1.2e-28
L51_S25_CI-B8 1/1 369 383 .. 78 92 .] 4.5 7.4
MATH 3/4 301 414 .. 1 159 [] 97.8 1.2e-25
MATH 4/4 436 549 .. 1 159 [] 91.4 6.5e-24
NCD2 1/1 572 584 .. 163 177 .] 5.4 1.4
Alignments of top-scoring domains:
MATH: domain 1 of 4, from 27 to 141: score 163.3, E = 4.2e-45
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t+k+ Sk++ eg++yy+ ++e r+nipWr lri++n+g
T16A1.1 27 TFKDLSKLR-------EGQSYYS-DIEVRYNIPWR---LRIFKNDG- 61
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
flg+ LhC+ke ++ ie+ kW+++t+ft+klv+ Gk
T16A1.1 62 ------FLGVNLHCEKE--EC--IETKKWTFQTKFTMKLVTVGGKF---- 97
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
+ + ++ h F+kp+g+g++k FisW+++++dy ++
T16A1.1 98 ----FRRIVQ------HEFQKPEGYGMDK-----FISWENMLRDY---VD 129
dDsiiiEaeVkI<-*
+Ds iiE++++I
T16A1.1 130 NDSTIIEIHADI 141
Pox_VLTF3: domain 1 of 1, from 259 to 272: score 3.2, E = 6.9
*->FiPNNdignEYvFv<-*
Fi Nd +nEYv +
T16A1.1 259 FISWNDMENEYVNN 272
MATH: domain 2 of 4, from 169 to 283: score 108.6, E = 1.2e-28
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t+kn S+++ e+e ++ + +++nipW + i + +
T16A1.1 169 TFKNLSRFE-------EDEKDFS-DAVDHYNIPWI---IEIIKTNE- 203
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
flg+yL C+ke e +kWsi ++++kl+s++G+
T16A1.1 204 ------FLGIYLNCQKE--YH---EGRKWSIKCKYEFKLISASGN----- 237
ssttltkktkdaknnshvFekp.tgegwgksGfkkFisWddLeddyngyl
l+ + + vF + ++g+g FisW+d+e++y +
T16A1.1 238 ----LHSAQQ-----TTVFGNGsSGWGDNT-----FISWNDMENEY---V 270
vdDsiiiEaeVkI<-*
++Dsi +E+ VkI
T16A1.1 271 NNDSIDVEISVKI 283
L51_S25_CI-B8: domain 1 of 1, from 369 to 383: score 4.5, E = 7.4
*->eeIekklekLldskG<-*
++Ie++l++++d++G
T16A1.1 369 SNIEQTLKLVFDKSG 383
MATH: domain 3 of 4, from 301 to 414: score 97.8, E = 1.2e-25
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
tikn+S+i+ ege+y t +++ rfnipWr lr + g
T16A1.1 301 TIKNMSSIR-------EGEDYDT-DTQYRFNIPWR---LRARKTLG- 335
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
fl++ L C+ e + + ie+++t++lv nG+
T16A1.1 336 ------FLEIVLFCNEE--YC---MAWNKIIEADCTFTLVCTNGSN---- 370
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
++ + k vF+k+ g g ++ Fi+Wd++e+ y y
T16A1.1 371 ----IEQTLK------LVFDKSGGQGISR-----FIRWDEMEK-Y--YQL 402
dDsiiiEaeVkI<-*
++s+ i a Vk
T16A1.1 403 NGSVNIQAKVKL 414
MATH: domain 4 of 4, from 436 to 549: score 91.4, E = 6.5e-24
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t+ n+S+++ g ++ ++ee+ W+ ++++ n+g
T16A1.1 436 TVANISNMR-------KGTTSFS-NSEEWNYALWK---VCLKNNNG- 470
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
f +l+L C +e s e+ ++e++++l lv + Gk
T16A1.1 471 ------FAELFLNCGNE--NS---EQESRTVEAKYQLSLVGAGGKQ---- 505
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
++ + h Fe p++ g +k i+W d++++y v
T16A1.1 506 ----ISEFFE------HNFETPDSNGDPK-----VIRWKDMLEQY---AV 537
dDsiiiEaeVkI<-*
dDs+ iEa+V
T16A1.1 538 DDSVRIEAHVSF 549
NCD2: domain 1 of 1, from 572 to 584: score 5.4, E = 1.4
*->dagYkysakisRkks<-*
+a Y+ys+ ++k++
T16A1.1 572 EAEYNYSK--TKKHC 584