Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T16G1.9
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Query: T16G1.9 CE20079 Ank repeat status:Partially_confirmed TR:Q9U367 protein_id:CAB63315.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 55.5 5.4e-14 3
Glyco_hydro_20b Glycosyl hydrolase family 20, domain 9.5 1 2
Ala_racemase_C Alanine racemase, C-terminal domain 8.0 0.8 1
RuvC Crossover junction endodeoxyribonucle 4.4 2.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/3 46 78 .. 1 33 [] 11.0 0.25
ank 2/3 130 162 .. 1 33 [] 15.5 0.013
ank 3/3 163 196 .. 1 33 [] 29.6 1.2e-06
RuvC 1/1 200 208 .. 150 158 .] 4.4 2.2
Glyco_hydro_20b 1/2 361 396 .. 85 124 .. 1.7 80
Glyco_hydro_20b 2/2 437 457 .. 120 143 .] 7.7 2.8
Ala_racemase_C 1/1 578 591 .. 118 131 .] 8.0 0.8
Alignments of top-scoring domains:
ank: domain 1 of 3, from 46 to 78: score 11.0, E = 0.25
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
T LH A++ + ++ v+ Ll+ G ++++q+
T16G1.9 46 KEGTLLHKAVELDAADSVASLLSGGVNPCVQNL 78
ank: domain 2 of 3, from 130 to 162: score 15.5, E = 0.013
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
nT L +Aa levvk Ll +GA +++ +
T16G1.9 130 TKNTLLNWAADFATLEVVKALLTNGATVDLANS 162
ank: domain 3 of 3, from 163 to 196: score 29.6, E = 1.2e-06
*->dGnTPLHlAakrg.nlevvklLlqrGAdlnaqdd<-*
+TPLH A++r ++e+vklLl+ GA++ ++++
T16G1.9 163 KDETPLHTAILRKaDPEIVKLLLSSGANPALKTK 196
RuvC: domain 1 of 1, from 200 to 208: score 4.4, E = 2.2
*->DALAlAiTH<-*
DA+AlA TH
T16G1.9 200 DAFALAETH 208
Glyco_hydro_20b: domain 1 of 2, from 361 to 396: score 1.7, E = 80
*->dESYtLsIks.dssDkvnivikAntvwGAlrGLETlsQLiv<-*
++SYtL+I + ++ + +G ++++ T+ Q ++
T16G1.9 361 SGSYTLTIDAiRG-----VEVVGSDYAGIRHAFATFVQIVR 396
Glyco_hydro_20b: domain 2 of 2, from 437 to 457: score 7.7, E = 2.8
*->sQLivydsegntfsinqvsIsDsP<-*
+QL +++s+g t i +++I D P
T16G1.9 437 KQLTDISSDG-T--IKELTIRDQP 457
Ala_racemase_C: domain 1 of 1, from 578 to 591: score 8.0, E = 0.8
*->llcrlgkRvpRvYi<-*
ll+++ +R+pR+Y+
T16G1.9 578 LLTSIQRRIPRIYL 591