Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T16H5.1
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Query: T16H5.1 CE30834 status:Partially_confirmed TR:O61715 protein_id:AAM45360.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Innexin Innexin 465.6 4e-136 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Innexin 1/1 37 417 .. 1 412 [] 465.6 4e-136
Alignments of top-scoring domains:
Innexin: domain 1 of 1, from 37 to 417: score 465.6, E = 4e-136
*->dDavDrLnYlyTttLLvffslLisaKQYVGsPIqCwvPaqFtDLgsW
dDavDrLnY+yT+++L+++ l isaKQY+G+PI+Cwv+ ++ +s+
T16H5.1 37 DDAVDRLNYYYTPLILAVCCLVISAKQYGGTPIECWVN-PHS-RESM 81
eqYaEnYCwiqnTYFvPfaferqqevpvitvpdrknrqsldpkdkkqigY
e+Y+E YCwiqnTY++P + ++vp+ ++ r++ q igY
T16H5.1 82 EEYIESYCWIQNTYWIP----MYENVPD-DHTAREEKQ---------IGY 117
YQWVPFvLalqAalFYlPsilWrllskesGikiqelvdmaed.irnikee
YQWVPF+L +A++F lP+i+Wrl s++sG++iq l++ a+d+ ++ +
T16H5.1 118 YQWVPFILIAEALMFSLPCIFWRLCSFQSGLNIQTLINAACDgQALLDAS 167
ekkkkikalarhLrGrylrdklrlrkkkirphkilkfsniqysagrgrgC
+ k + a++++ + d+l+l+ r +++ ++i++s +++
T16H5.1 168 DRQKAVEAITTN-----FVDNLDLQSPNGRIRARGWIARIKFSRFLS--- 209
GsfvtalYlvtKlLYlaNVilQfyLlNkFLgterslwwGfdvlkdllnGt
G ++ l ++tKlLY NV++Qf +lN L + ++l++Gf+vl+d+++G
T16H5.1 210 GQCLSILHSFTKLLYSMNVVAQFLILNACLKSSDFLFFGFQVLNDIWAG- 258
pRAPEFSFDKQRFAailteWeesPmvGvFPRVTlCDFeVRvlgGNvqrHt
++W e+ G+FPRVTlCDFeVR l+ N+ r+t
T16H5.1 259 -----------------RPWTET---GHFPRVTLCDFEVRYLA-NLNRYT 287
vQCVLmINmFNEKIFvFLWFWfllLlvlTvislfywiliifspsfnenFI
vQC L IN++NEK+F FLW W+ +L + T++s++ywi+++f+ s + ++
T16H5.1 288 VQCALLINIINEKVFAFLWCWYMILAIITTCSFIYWIANSFIHSEKVDYV 337
rsyLemidereddek..............kkeneselvrrFvskyLkpDG
++++ + e+++ ++ +++ + ++ + + + l+ Fvs +Lk+DG
T16H5.1 338 MKFIQIAESSEFKKLqkfekdatverlytVIAFAPHLLDTFVSDFLKSDG 387
vFLLrmisdhaGdlfttElvgeLwkkylen<-*
v++Lrmis+haGd+++ lv+ Lw++++e+
T16H5.1 388 VLMLRMISNHAGDMIVVQLVRNLWQEFRER 417