Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T18D3.4
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Query: T18D3.4 CE31619 locus:myo-2 myosin heavy chain C status:Confirmed TR:Q20439 protein_id:CAA92183.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Myosin_tail Myosin tail 1508.6 0 2
myosin_head Myosin head (motor domain) 1451.3 0 1
Myosin_N Myosin N-terminal SH3-like domain 66.3 8e-19 1
UPF0042 Uncharacterised P-loop ATPase protein 7.5 0.3 1
ABC_tran ABC transporter 4.8 3.1 1
DUF641 Plant protein of unknown function (DU 4.5 5.2 1
RICH RICH domain 4.0 7.2 1
Phage_min_cap Phage minor capsid protein 3.7 3.3 1
Hanta_nucleocap Hantavirus nucleocapsid protein 3.1 1.9 1
DUF511 Protein of unknown function (DUF511) 2.6 7.5 1
aconitase Aconitase family (aconitate hydratase 1.6 8.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Myosin_N 1/1 30 73 .. 1 48 [] 66.3 8e-19
ABC_tran 1/1 167 181 .. 1 15 [. 4.8 3.1
UPF0042 1/1 168 181 .. 1 15 [. 7.5 0.3
aconitase 1/1 552 562 .. 1 11 [. 1.6 8.7
myosin_head 1/1 83 782 .. 1 734 [] 1451.3 0
Hanta_nucleocap 1/1 912 945 .. 1 35 [. 3.1 1.9
Myosin_tail 1/2 979 1083 .. 175 281 .. -15.9 5.9e+04
Phage_min_cap 1/1 1078 1095 .. 477 494 .] 3.7 3.3
RICH 1/1 1076 1122 .. 43 85 .] 4.0 7.2
DUF641 1/1 1096 1124 .. 113 141 .] 4.5 5.2
DUF511 1/1 1399 1410 .. 309 320 .] 2.6 7.5
Myosin_tail 2/2 1084 1943 .. 1 864 [] 1534.1 0
Alignments of top-scoring domains:
Myosin_N: domain 1 of 1, from 30 to 73: score 66.3, E = 8e-19
*->KknVWVpDekegfikgeIkesteGdkVtVktedtrsGktvtvkkDdv
KknVW+pD+++g+i+g I+ t+Gd+VtV G ++tvkkD v
T18D3.4 30 KKNVWIPDSEDGYIEGVIT-KTAGDNVTVSIGQ---GAEKTVKKDVV 72
q<-*
q
T18D3.4 73 Q 73
ABC_tran: domain 1 of 1, from 167 to 181: score 4.8, E = 3.1
*->GevlalvGpNGaGKS<-*
++ ++G++GaGK+
T18D3.4 167 NQSMLITGESGAGKT 181
UPF0042: domain 1 of 1, from 168 to 181: score 7.5, E = 0.3
*->ielvivtGrSGAGKs<-*
+ +++tG SGAGK+
T18D3.4 168 -QSMLITGESGAGKT 181
aconitase: domain 1 of 1, from 552 to 562: score 1.6, E = 8.7
*->TlyeKildaHl<-*
Tl+ K++d+Hl
T18D3.4 552 TLAQKLIDQHL 562
myosin_head: domain 1 of 1, from 83 to 782: score 1451.3, E = 0
*->vEDmveLtyLnEpsvlhNLKkRYksdlIYTYsGlvLvsvNPYkrLpq
+EDm++Lt+Ln++svl+NLK RY+++lIYTYsGl++v++NPYkrLp
T18D3.4 83 TEDMSNLTFLNDASVLYNLKARYAAMLIYTYSGLFCVVINPYKRLP- 128
iYteeiiakYrGKrryElPPHiFAiADeAYRsMlsdkeNQsilISGESGA
iYt+++ +++GKrr+E+PPH+FA++DeAYR+Ml+ +eNQs+lI+GESGA
T18D3.4 129 IYTDSVARMFMGKRRTEMPPHLFAVSDEAYRNMLQNHENQSMLITGESGA 178
GKTEntKkvmqYlAaVsggnsgngeev.......psvkvgrvEdqILqsN
GKTEntKkv++Y+AaV++++++ ++ + ++++ ++k+ ++EdqI+q+N
T18D3.4 179 GKTENTKKVISYFAAVGAAQQETFGAKkaateedKNKKKVTLEDQIVQTN 228
PiLEAFGNAKTtRNNNSSRFGKyieIqFdktGkivGakIenYLLEKSRVv
P+LEAFGNAKT+RNNNSSRFGK+i+I+F k G+ ++++Ie+YLLEKSRV+
T18D3.4 229 PVLEAFGNAKTVRNNNSSRFGKFIRIHFSKQGRVASCDIEHYLLEKSRVI 278
yQtegERNFHIFYQLLaGasqqnlkkeLkLtndpedYhYLnqggevkpcy
+Q++gER++HIFYQ + + lkk+L+L + ++dY+++ q++ +
T18D3.4 279 RQAPGERCYHIFYQVFSDYLPN-LKKDLLLNKPVKDYWFIAQAE-----L 322
tvdGiDDsegnveeFketrkAmdilGftdeeqrsIFrivAaILhlGNikF
++dGi+D+ ee ++t++A+dil ft +e+++++r+vAa +h+GN+kF
T18D3.4 323 IIDGINDK----EEHQLTDEAFDILKFTPTEKMECYRLVAAMMHMGNMKF 368
kqrrkeeaaipddnnadtkalekaaeLlGvdatelekALlsrriktGteg
kqr++ee+a+pd+ t ++e+aa ++G+d++e++kAL+++r+k+G+e+
T18D3.4 369 KQRPREEQAEPDG----TDDAERAAKCFGIDSEEFLKALTRPRVKVGNEW 414
rkStvtkpqnveQAsyARDALAKalYsRLFdWIVnrINktLdfkakegqd
v+k+qn+eQ+++A++A+AK lYsR F+W+V+++N+tLd+k +++
T18D3.4 415 ----VNKGQNIEQVNWAVGAMAKGLYSRIFNWLVKKCNQTLDQKGISR-- 458
asfIGVLDIyGFEIFekNSFEQLCINYvNEKLQQfFNhhmFklEQEEYkr
++fIGVLDI+GFEIF++NSFEQL+IN+vNEKLQQfFNhhmF+lEQEEY r
T18D3.4 459 DHFIGVLDIAGFEIFDFNSFEQLWINFVNEKLQQFFNHHMFVLEQEEYAR 508
EGIeWtfIdFgdNLQpcIDLIEkKsPpGILsLLDEeClfPkaqSGtDqtF
EGI+WtfIdFg++LQ+cI+LIEk+ +GI+++LDEeC++Pka tD t+
T18D3.4 509 EGIQWTFIDFGLDLQACIELIEKP--LGIIAMLDEECIVPKA---TDLTL 553
ldKLystfskhpahfekfsPrfrqkksg.ahFiikHYAGdVeYnvegFle
++KL++++++++++fek P+++++k+ +ahF+++HYAG+V+Yn+ ++le
T18D3.4 554 AQKLIDQHLGKHPNFEK--PKPPKGKQAeAHFAMRHYAGTVRYNCLNWLE 601
KNKDpLfddlisllksSs.npllaeLFpdeetlagpfeadpsslskkrks
KNKDpL+d+++ ++k+S+++ l++e ++d++t++++++a+ + + ++
T18D3.4 602 KNKDPLNDTVVTVMKASKeHALIVEVWQDYTTQEEAAAAAAKGTAGAK-- 649
gskNkstgkktkksnfiTvGaqfKeslneLMktLsstnLPHFvRCIkPNe
kk+k+++f+Tv+++++esln+LM++L st+ PHF+RCI+PNe
T18D3.4 650 --------KKGKSGSFMTVSMLYRESLNKLMTMLHSTH-PHFIRCIIPNE 690
kKkagvfDaslVlhQLrclGVLEgiRIrRaGFPnRitfdeFlqRYriLap
kK++gv+Da lVl+QL+c+GVLEgiRI+R+GFPnR ++++F+qRY++La+
T18D3.4 691 KKASGVIDAGLVLNQLTCNGVLEGIRICRKGFPNRTLHPDFVQRYALLAA 740
ktwPkwsgdakkgeknEIvaceklLqsLnlDkg...eeyrfGkTKIFFR<
++ ++ dakkg + ++L +L +k+ ++e +r+G TK+FF+
T18D3.4 741 DESIIGKTDAKKG-------SALMLARLVKEKKleeENFRVGLTKVFFK 782
-*
T18D3.4 - -
Hanta_nucleocap: domain 1 of 1, from 912 to 945: score 3.1, E = 1.9
*->msnlkElqeeitaHEqqLviARqKlkdAEkavEvD<-*
+E+ e +ta +q v+ Kl dA k++Ev+
T18D3.4 912 -GSTREVEERMTAMNEQKVALEGKLADASKKLEVE 945
Myosin_tail: domain 1 of 2, from 979 to 1083: score -15.9, E = 5.9e+04
*->KlnaEKkakqlEsQlsElqvKldElqRqlnDltsqKsRLqsENsdLt
K +aEK ak E+Q+ lq ++ + +++ l+ ++ N Lt
T18D3.4 979 KVEAEKNAK--EHQIRALQDEMRQQDENISKLNKERKNQEEQNKKLT 1023
rqleEaEaqvsqlsklKsqlesQLEeAkRslEEEsReRanLqaqlrnleh
+l++aE q+ +++klK+ l + LE+ +++E E R+Ra r e
T18D3.4 1024 EDLQAAEEQNLAANKLKAKLMQSLEDSEQTMEREKRNRADMDKNKRKAEG 1073
DlDslrEqlE<-*
+l ++E+lE
T18D3.4 1074 ELKIAQETLE 1083
Phage_min_cap: domain 1 of 1, from 1078 to 1095: score 3.7, E = 3.3
*->AdEwlAkIakEkqteipe<-*
A+E l++++k k+++++
T18D3.4 1078 AQETLEELNKSKSDAENA 1095
RICH: domain 1 of 1, from 1076 to 1122: score 4.0, E = 7.2
*->aIKtkYLyeLdvlkskseKs.....aelqelvsktkaeLDaAFekFK
+I +++L eL+++ks e + +++++el +l +k e aA+ k +
T18D3.4 1076 KIAQETLEELNKSKSDAENAlrrkeTELHTLGMKLEDE-QAAVAKLQ 1121
K<-*
K
T18D3.4 1122 K 1122
DUF641: domain 1 of 1, from 1096 to 1124: score 4.5, E = 5.2
*->vkaKdseIdsLkekleealrankklekrl<-*
++ K++e + L +kle +++a kl k +
T18D3.4 1096 LRRKETELHTLGMKLEDEQAAVAKLQKGI 1124
[output cut off at A = 10 top alignments]