hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T19F4.1a
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Query:  T19F4.1a  CE29348    status:Partially_confirmed TR:Q95QA0 protein_id:AAL02524.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
7tm_1    7 transmembrane receptor (rhodopsin family)     35.0    9.9e-11   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
7tm_1      1/2      95   134 ..    71   111 ..    21.6  2.1e-06
7tm_1      2/2     172   239 ..   158   224 ..    19.6  9.2e-06

Alignments of top-scoring domains:
7tm_1: domain 1 of 2, from 95 to 134: score 21.6, E = 2.1e-06
                   *->yaSillLtaISiDRYlAIvhPlryrrrrtsprrAkvvillv<-*
                      ++S++ +++I+++R++A+++Pl+ r+++t pr+ +  il++
    T19F4.1a    95    TCSVYIMVMITLERWVAVCRPLQVRVWCT-PRKSRNAILVI    134

7tm_1: domain 2 of 2, from 172 to 239: score 19.6, E = 9.2e-06
                   *->stwlvsyvllstlvgFllPllvilvcYtrIlrtlrkrarkgas.kkr
                      +++  +y++l ++  Fl+P++v+++++++++ +++k  +  +  +++
    T19F4.1a   172    WYYVGYYTILYIVTHFLVPFSVMAFANGHVIVAMCKLSKTRQMlTRQ 218

                   sskerkaaktllvvvvvFvlC<-*
                   +++e+ ++ +ll+v +vF++C
    T19F4.1a   219 QQREQSTTVMLLIVTFVFAIC    239

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