Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T20D3.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T20D3.5 CE03673 ADP\/ATP carrier protein like status:Partially_confirmed TR:O01256 protein_id:CAA92487.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
mito_carr Mitochondrial carrier protein 35.2 3.2e-08 2
zf-MIZ MIZ zinc finger 3.0 8.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-MIZ 1/1 18 23 .. 1 6 [. 3.0 8.9
mito_carr 1/2 31 121 .. 1 125 [] 26.2 9.2e-06
mito_carr 2/2 130 179 .. 1 79 [. 9.1 0.44
Alignments of top-scoring domains:
zf-MIZ: domain 1 of 1, from 18 to 23: score 3.0, E = 8.9
*->vSLkCP<-*
+SLkCP
T20D3.5 18 ISLKCP 23
mito_carr: domain 1 of 2, from 31 to 121: score 26.2, E = 9.2e-06
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
++++ a+ ++G++ a+++ Pl++v + LQt +
T20D3.5 31 FSICHAQAAFLSGVCEAMLC-PLERVQVLLQTTIFHD---------- 66
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
k+k++l++f ++ G++ Y+G+++ l
T20D3.5 67 ------------------KFKNTLHTFNRLRD-YGYR---EYYRGFSVIL 94
lrvapygaaiyFgtYEqlKklllkkkge<-*
+r++ + + i+F+ + lK+ ++++ +
T20D3.5 95 IRNSLS-NTIFFTLRDPLKQKIVGIPQA 121
mito_carr: domain 2 of 2, from 130 to 179: score 9.1, E = 0.44
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
++ +++aG++ Ga+ +t+ +Pl v+K +Q+ +
T20D3.5 130 QLIGDFVAGSLLGATISTAFFPLGVIKNHMQAKVGV----------- 165
gksksyrsakksnasasrkYkgildcfkkivk<-*
kY + + +f+ +++
T20D3.5 166 ------------------KYESGFKVFRDVWQ 179