hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T20G5.4
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Query:  T20G5.4  CE28844   Putative membrane protein status:Confirmed SW:P34577 protein_id:CAA83005.2

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
DUF289        Putative membrane protein                 828.5   2.4e-245   1
ABC2_membrane ABC-2 type transporter                      4.2          5   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
ABC2_membrane   1/1     125   143 ..     1    19 [.     4.2        5
DUF289          1/1       1   379 [.     1   404 []   828.5 2.4e-245

Alignments of top-scoring domains:
ABC2_membrane: domain 1 of 1, from 125 to 143: score 4.2, E = 5
                   *->lrslfryreLilqLlkrdi<-*
                      +r+++ry+eL   L+ rd+
     T20G5.4   125    RRNIIRYCELTQVLIFRDL    143

DUF289: domain 1 of 1, from 1 to 379: score 828.5, E = 2.4e-245
                   *->MTisYnldVstssiwtFfkLllRWKGSiWKavwkELivWlflYyiIF
                      MT+sYn+ V+ts++wtF+ L++RW+GS+W a+w ++ vWl+lY+++
     T20G5.4     1    MTVSYNQSVATSRPWTFLALIFRWRGSVWSAIWIQYSVWLGLYFLV- 46

                   saIYRfaLsksqwdgyqeiFeklvryfdsrldytIPLtFMLGFFVttVvr
                   saIYRf+Ls++q    q+iF +lv y++sr++y +PL++MLGFF++ V r
     T20G5.4    47 SAIYRFILSAYQ----QQIFVRLVDYVNSRMSY-VPLDWMLGFFIAGVLR 91

                   RWwkiFdniGwIDniAlavaayirGkdeeaRiiRRnIiRYlVLsQvLvFR
                   R+w+++d+iG+IDniA+++a+yirG +e+a+++RRnIiRY++L+QvL+FR
     T20G5.4    92 RFWYLYDIIGFIDNIACSTATYIRGDSERAKQYRRNIIRYCELTQVLIFR 141

                   DISmkVRkRFPTldtlVaAGlMteeEldklsesikskyyvgdkYWvPInW
                   D Smk RkRFPTldt++aAG+M+++E++++ + i+++y+   kY++P+nW
     T20G5.4   142 DLSMKARKRFPTLDTVAAAGFMMPHEKANF-DLIQYNYN---KYFLPFNW 187

                   afsLlQyearkeGlIdsdylynvlwdeIkeFRtglalLsnyDWVPIPLvY
                   a+ L+ y+arkeGlI++dy+++v+ + Ik+FRtgla+++nyDWVP+P++Y
     T20G5.4   188 AWALV-YNARKEGLIEGDYYVTVISEDIKKFRTGLAWVCNYDWVPLPIIY 236

                   PQVVfLAVRlYFfvCLfgRQfldsddndnktenyIDlyfPVPFimTilQF
                   P +V+LAV++YFfv +++RQ++  ++ d +++  IDl+fP   +mT++QF
     T20G5.4   237 PTIVCLAVHMYFFVGILARQYVKGSEID-PDM--IDLVFP---FMTSIQF 280

                   IFyvGWmKVAEvLLNPlGEDDDDFEcNyiIDRNLavGlaIVDtlWvkEnq
                   +Fy+GW+KV+E LLNP+GED DDFE+N++IDRNLa+Gl+IVD++
     T20G5.4   281 VFYMGWLKVGEGLLNPWGEDPDDFETNMLIDRNLAMGLKIVDEG------ 324

                   ydrhPelekDvFwdedaePlYstsesFakipnnplvGSaanvklsendve
                   yd++P+lekD+Fwd++++PlYs++ + +++++++ +GS+a++k+ +  v+
     T20G5.4   325 YDKTPRLEKDAFWDDTWVPLYSEASA-HEKRYHQRQGSLAHIKIGRS-VS 372

                   Evkmvph<-*
                   +v+mvp+
     T20G5.4   373 QVRMVPR    379

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