hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T20G5.6
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Query:  T20G5.6  CE25119  locus:unc-47  status:Confirmed SW:P34579 protein_id:CAA83006.2

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Aa_trans      Transmembrane amino acid transporter pr   451.2   1.5e-132   1
Bac_rhodopsin Bacteriorhodopsin                           2.6          9   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Bac_rhodopsin   1/1     258   278 ..     1    21 [.     2.6        9
Aa_trans        1/1      87   479 ..     1   466 []   451.2 1.5e-132

Alignments of top-scoring domains:
Bac_rhodopsin: domain 1 of 1, from 258 to 278: score 2.6, E = 9
                   *->lttwlwiGaagmllGtllfiy<-*
                      +t +l i+++  ++G+++f y
     T20G5.6   258    ITFSLNINTLPTIVGMVVFGY    278

Aa_trans: domain 1 of 1, from 87 to 479: score 451.2, E = 1.5e-132
                   *->rkisalqaafnlikaivGaGvLsLPyAfkqlGwipGlillvlvglis
                       +isalqaa+n+++ai+G+++++LP A+k +Gw+ ++  +v+v++++
     T20G5.6    87    EPISALQAAWNVTNAIQGMFIVGLPIAVKVGGWW-SIGAMVGVAYVC 132

                   lytlllLvkcskyvdkrekgkrrksYgdlakaiqasyppyrllGpkmgrl
                   ++t++lL++c+++     + k rk+Y+++a      +++++ +G++
     T20G5.6   133 YWTGVLLIECLYEN----GVKKRKTYREIA------DFYKPGFGKW---- 168

                   linfailvnqfGvcivYlifagdnLpaifdsffsdksgendpchlslvyf
                    +++a+l++++ +ci+Yl++a+d+L+++f+s             ++++ +
     T20G5.6   169 -VLAAQLTELLSTCIIYLVLAADLLQSCFPS-------------VDKAGW 204

                   ilifviiffpLsvfipnlsaLsilSllaavsslyysiglliivilvvivv
                   ++i+++ ++++s f+ +l+++s lS++ a+s+l        iv+l+++ +
     T20G5.6   205 MMITSASLLTCS-FLDDLQIVSRLSFFNAISHL--------IVNLIMVLY 245

                   elivldlqgvsslpsswctPstfiklkglflaiGiivFAfeGhavllpIq
                   +l++++++++s+ ++     s +i+  +l++ +G++vF +++h++l++++
     T20G5.6   246 CLSFVSQWSFSTITF-----SLNIN--TLPTIVGMVVFGYTSHIFLPNLE 288

                   ntmksTPskFkskkmtkvlnvaiiivtvlyilvGfvGYltFGnnvkgnil
                    +mk+ P++F+      +l++++i+++v++ ++G++G+ltFG+ ++++i
     T20G5.6   289 GNMKN-PAQFN-----VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEEIS 332

                   lnlpntsPnpvwliiianlllvihlllsyplqafPivqmienllfrkple
                   ++lpn+s     ++i++nl+lv+++llsypl+++++vq ++n+lf
     T20G5.6   333 NSLPNQS-----FKILVNLILVVKALLSYPLPFYAAVQLLKNNLF----- 372

                   dnseddeetseilnnasgkhtpkskllrvviRtglVvvtlliAwllvPfl
                         +++++++++ ++ +++ ++ + v++R++lV++tl++A l+vP+l
     T20G5.6   373 ------LGYPQTPFTSCYSPDKSLREWAVTLRIILVLFTLFVA-LSVPYL 415

                   gdllsLvGAtsgapltfilPplfhlklkkpkkksleklwfkkildviciv
                     l++LvG ++g++l+fi+P+lfhl++k ++++ +ek++     d  +i+
     T20G5.6   416 VELMGLVGNITGTMLSFIWPALFHLYIKEKTLNNFEKRF-----DQGIII 460

                   iglllmiygviglilslvd<-*
                   +g+ ++i gv+++ ++l
     T20G5.6   461 MGCSVCISGVYFSSMELLR    479

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