hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T22C1.8
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Query:  T22C1.8  CE18278   tyrosine specific protein phosphatase status:Partially_confirmed TR:Q22668 protein_id:CAA99930.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              346.2   3.5e-100   1
DSPc          Dual specificity phosphatase, catalytic    12.9      0.024   1
squash        Squash family serine protease inhibitor     5.0       0.64   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
DSPc            1/1     307   330 ..   102   125 ..    12.9    0.024
Y_phosphatase   1/1     151   376 ..     1   274 []   346.2 3.5e-100
squash          1/1     455   470 ..     1    16 [.     5.0     0.64

Alignments of top-scoring domains:
DSPc: domain 1 of 1, from 307 to 330: score 12.9, E = 0.024
                   *->arqkggkVLVHCqAGiSRSAtlii<-*
                      +r+  g+V VHC AGi R++t+++
     T22C1.8   307    VRTASGPVTVHCSAGIGRTGTFVA    330

Y_phosphatase: domain 1 of 1, from 151 to 376: score 346.2, E = 3.5e-100
                   *->NkeKNRykdilpyDhtRVkLk..egsDYINAnyidgpqsrtlvvykk
                      N+ KNRykd++++D tRV+L++++++DYI+Any++g
     T22C1.8   151    NPTKNRYKDVVCNDITRVILSdgGDGDYIHANYVNG----------L 187

                   pkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqY
                   +  +I+TQg    T+ DFWrMv + k+ +IVML++ +E+g+   K CaqY
     T22C1.8   188 NAPFILTQGATAATVIDFWRMVVHTKTAYIVMLCEVMEDGK--AK-CAQY 234

                   WPeeggeeggsltyGditVtlvseekkddddytvRtleltn.gdesknea
                   +Pe   + g+ +t+G  t+ +  e+   d++++ Rtl ++n ++
     T22C1.8   235 YPE---KAGEAMTFGAWTILCSLEDD-KDANIIKRTLSVRNvDN------ 274

                   kqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqenes
                         g++++++h+h ++WPD++vP s +++ll++l  vr++++
     T22C1.8   275 ------GKEHILKHLHTKSWPDRCVPNS-TMALLRMLYIVRTASG----- 312

                   geaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvidi
                                  P++VHCSAGiGRTGtf+ai+++lq l+ +++  d+
     T22C1.8   313 ---------------PVTVHCSAGIGRTGTFVAIEACLQILTDGKEL-DL 346

                   fdivkelRsqRpgmVQteeQYiFiydaile<-*
                   +++++ lR++R+g++Q + QY+ + +++++
     T22C1.8   347 LGTCRALRNSRAGSIQVDIQYMALVQILIN    376

squash: domain 1 of 1, from 455 to 470: score 5.0, E = 0.64
                   *->riCPrilmeCkrDsDC<-*
                      +iC +il+  k+D +C
     T22C1.8   455    KICEKILKPIKKDKEC    470

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