hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T22D1.4
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Query:  T22D1.4  CE17248   glycotransferase status:Partially_confirmed TR:Q9GZH4 protein_id:AAF98626.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Ribophorin_I Ribophorin I                               881.1   3.4e-261   1
Fanconia     Fanconi anaemia group A protein              5.1        1.4   1
ICL          Isocitrate lyase family                     -0.1        2.8   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Fanconia       1/1     442   454 ..     1    13 [.     5.1      1.4
Ribophorin_I   1/1      40   463 ..     1   465 []   881.1 3.4e-261
ICL            1/1     582   590 ..   525   533 .]    -0.1      2.8

Alignments of top-scoring domains:
Fanconia: domain 1 of 1, from 442 to 454: score 5.1, E = 1.4
                   *->REELLvaLFFFsL<-*
                      RE LL   FFFsL
     T22D1.4   442    REPLLASAFFFSL    454

Ribophorin_I: domain 1 of 1, from 40 to 463: score 881.1, E = 3.4e-261
                   *->dlvnsnveRtiDLtSqivkvttelkveNvGsePqsevYllafpsele
                      +++++nv+RtiD+tSqivkv+t +++eNvG++Pqs+v l+a+++e++
     T22D1.4    40    AWKAANVDRTIDATSQIVKVSTLYSFENVGNGPQSKV-LIALSKEES 85

                   akLaflsVlftsgKgepkkgnnplkvretdqpGDDaekdiryftvtLpkP
                   a+L+f+s++++++Kg       +lk++e++     aekd+++++v+L++P
     T22D1.4    86 ATLSFISAGIDGSKG-------KLKISEKP-----AEKDLAVYEVDLRTP 123

                   laPGekvtLevetvlthvLqPfPeeItQsEsQfVvyetsayllSpYtTks
                   +a+G+kvt+++++++t+vL+P+P++I+Qs+sQfVv++tsay++S+Y+T++
     T22D1.4   124 VAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFVVLHTSAYVPSLYETVT 173

                   QkttiKlpSsnfvesYTkvdlssappkrsgnelkYGPYedvppfsydLeP
                   Qktti+++++++++s+T+v+    p+k+++++++YGPY+++p+f+++  P
     T22D1.4   174 QKTTIRTTQGGKLLSATTVS----PSKQETERVIYGPYVNIPAFETK--P 217

                   ivVhYEnnaPfatateLeReIEvSHWGkniaveEnyeLtHkGAkLkgnFS
                   ++VhYEnn+Pf++at++eR+IEvSHWG niaveE++eL+HkGA+L+g+FS
     T22D1.4   218 VKVHYENNSPFVIATIVERFIEVSHWG-NIAVEEYIELVHKGAELDGPFS 266

                   RlDyqkqprtqlvSgasAirslktvLPprAkDvYYRDeIGNISTShlrvd
                   R+Dyq+++r   +++++A+++++tvLP++AkD+YYRDeIGNISTS++r++
     T22D1.4   267 RIDYQMDRR---GRRQPALQQFTTVLPAQAKDIYYRDEIGNISTSAVRIR 313

                   sdktelEirPRFPLFGGWktsFtiGYnlPleeFLfssVsGgdkyfvLkip
                   +d++++EirPRFPLFGGWkts++iGYnlP+ee+L+s+   g++y +Lk++
     T22D1.4   314 ADSVDVEIRPRFPLFGGWKTSYVIGYNLPSEEYLYSK---GNQY-ALKTK 359

                   lidGPhvfedivyekltvkvvLPEGakdirvetPyeAtSNGLPGisqspq
                   l+d  hvf+div+ekl++kv+LPE++k+++v+tPy+        ++++p+
     T22D1.4   360 LFD--HVFNDIVVEKLRTKVLLPEHVKRVKVATPYA--------VDRRPE 399

                   EltSkktYLDLtlGRpVlvlekeNlvpevhnqqfqVyYdFskismLrePl
                   El  k+tYLD t+GR+VlvlekeN+vp +h+q+f+V+Y+F++++mLrePl
     T22D1.4   400 EL--KPTYLD-TTGRLVLVLEKENIVP-DHSQFFTVTYEFEFVDMLREPL 445

                   litaafFllfvavivyvr<-*
                   l++a+fF+lf+++ivy+r
     T22D1.4   446 LASAFFFSLFFVIIVYSR    463

ICL: domain 1 of 1, from 582 to 590: score -0.1, E = 2.8
                   *->gkGVtEdQF<-*
                      ++G++E QF
     T22D1.4   582    TAGTEEQQF    590

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