Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T22D2.1
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Query:  T22D2.1  CE28778    status:Partially_confirmed TR:Q9N5D9 protein_id:AAF39969.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ank      Ankyrin repeat                                  94.1    5.3e-25   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ank        1/4     187   220 ..     1    33 []    26.3  1.1e-05
ank        2/4     221   257 ..     1    33 []     8.3      1.5
ank        3/4     259   291 ..     1    33 []    36.3  1.5e-08
ank        4/4     292   327 ..     1    33 []    32.2  2.3e-07

Alignments of top-scoring domains:
ank: domain 1 of 4, from 187 to 220: score 26.3, E = 1.1e-05
                   *->dGnTPLHlAakrgnlevvklLlq.rGAdlnaqdd<-*
                      +GnT+LH+A+++ n  vv+ +l++   dl+a+++
     T22D2.1   187    NGNTALHYAVSHANFAVVSSILDsGECDLDAPNR    220

ank: domain 2 of 4, from 221 to 257: score 8.3, E = 1.5
                   *->dGnTPLHlAakrg.....nlevvklLlqrGAdlnaqdd<-*
                       G+T+ +lAa++  +++ ++ vv +L q   ++na+
     T22D2.1   221    AGYTAVMLAALSQldddmEKAVVHRLFQ-MGNVNAKAS    257

ank: domain 3 of 4, from 259 to 291: score 36.3, E = 1.5e-08
                   *->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                      +G+T+L+lA+++g +   +lLl +GA++n qd
     T22D2.1   259    HGQTALMLAVSHGKKTTTELLLACGANVNEQDQ    291

ank: domain 4 of 4, from 292 to 327: score 32.2, E = 2.3e-07
                   *->dGnTPLHlAakrgnlevvklLlq...rGAdlnaqdd<-*
                      dG+T+L++Aa++g++e+vk+Ll ++   A+l  +d+
     T22D2.1   292    DGSTALMCAAEHGHKELVKMLLAenlVNASLTDVDN    327



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