Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T22D2.1
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Query: T22D2.1 CE28778 status:Partially_confirmed TR:Q9N5D9 protein_id:AAF39969.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 94.1 5.3e-25 4
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/4 187 220 .. 1 33 [] 26.3 1.1e-05
ank 2/4 221 257 .. 1 33 [] 8.3 1.5
ank 3/4 259 291 .. 1 33 [] 36.3 1.5e-08
ank 4/4 292 327 .. 1 33 [] 32.2 2.3e-07
Alignments of top-scoring domains:
ank: domain 1 of 4, from 187 to 220: score 26.3, E = 1.1e-05
*->dGnTPLHlAakrgnlevvklLlq.rGAdlnaqdd<-*
+GnT+LH+A+++ n vv+ +l++ dl+a+++
T22D2.1 187 NGNTALHYAVSHANFAVVSSILDsGECDLDAPNR 220
ank: domain 2 of 4, from 221 to 257: score 8.3, E = 1.5
*->dGnTPLHlAakrg.....nlevvklLlqrGAdlnaqdd<-*
G+T+ +lAa++ +++ ++ vv +L q ++na+
T22D2.1 221 AGYTAVMLAALSQldddmEKAVVHRLFQ-MGNVNAKAS 257
ank: domain 3 of 4, from 259 to 291: score 36.3, E = 1.5e-08
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+G+T+L+lA+++g + +lLl +GA++n qd
T22D2.1 259 HGQTALMLAVSHGKKTTTELLLACGANVNEQDQ 291
ank: domain 4 of 4, from 292 to 327: score 32.2, E = 2.3e-07
*->dGnTPLHlAakrgnlevvklLlq...rGAdlnaqdd<-*
dG+T+L++Aa++g++e+vk+Ll ++ A+l +d+
T22D2.1 292 DGSTALMCAAEHGHKELVKMLLAenlVNASLTDVDN 327