Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T22F7.1
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Query: T22F7.1 CE01416 status:Partially_confirmed TR:Q22686 protein_id:AAA20671.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 24.1 3.4e-06 2
UPF0032 MttB family UPF0032 5.9 1.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
sugar_tr 1/2 131 191 .. 55 123 .. 28.0 2.6e-07
UPF0032 1/1 158 196 .. 161 198 .. 5.9 1.7
sugar_tr 2/2 442 503 .. 404 470 .. 3.6 2.8
Alignments of top-scoring domains:
sugar_tr: domain 1 of 2, from 131 to 191: score 28.0, E = 2.6e-07
*->lvvsifflGrliGslfaGklgdrfGRkksllialvlfviGallsgaa
l++si+flG l+ + ++ +drfGR+++++i+l+l i + l +a
T22F7.1 131 LTTSIYFLGNLLIGQLFAVVADRFGRRPIIIICLLLTGIVGSLGSLA 177
pgytTiGlwafyllivGRvlvG<-*
p +f ll+v+R+++G
T22F7.1 178 P--------NFPLLLVARFIQG 191
UPF0032: domain 1 of 1, from 158 to 196: score 5.9, E = 1.7
*->PviiilLlklgiv.tyetLkkaRryiivlffvigallTP<-*
P+iii+Ll giv++ +L+ +++ + v+ f+ g TP
T22F7.1 158 PIIIICLLLTGIVgSLGSLAPNFPLLLVARFIQGSCYTP 196
sugar_tr: domain 2 of 2, from 442 to 503: score 3.6, E = 2.8
*->pwvilsElFPtkvRskalalataanwlanfiigflfpyitgaiglal
++++ +ElFPt +Rs +++++ + ++++++++ +f + + a g
T22F7.1 442 CFIYAAELFPTWCRSCCIGVCSTCCNIGAIVAPHIFLIDSAAPG--- 485
ggyvflvfagllvlfilfvf<-*
flv a++++l++ ++
T22F7.1 486 --AQFLVLAAVGLLCSGLTW 503