Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T22H2.6a
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Query: T22H2.6a CE24004 granulin precursor status:Partially_confirmed TR:Q9U362 protein_id:CAB54304.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
granulin Granulin 142.5 4.6e-45 3
DUF130 Domain of unknown function DUF130 3.6 4.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
granulin 1/3 109 151 .. 1 43 [] 70.7 1.3e-21
DUF130 1/1 177 188 .. 1 13 [. 3.6 4.1
granulin 2/3 191 231 .. 1 43 [] 63.3 3.3e-19
granulin 3/3 294 337 .. 1 43 [] 23.6 3e-06
Alignments of top-scoring domains:
granulin: domain 1 of 3, from 109 to 151: score 70.7, E = 1.3e-21
*->TCCrlssGewgCCPfpqAVCCeDgqHCCPqGfhCdadggrClq<-*
TCC+l + +wgCCP+p+AVCC D+ HCCP G++Cd +g rC+
T22H2.6a 109 TCCKLGDNTWGCCPMPNAVCCDDRSHCCPTGTTCDPQGARCIG 151
DUF130: domain 1 of 1, from 177 to 188: score 3.6, E = 4.1
*->kvCptsstttCpd<-*
vCp+ + +Cpd
T22H2.6a 177 VVCPDK-ASKCPD 188
granulin: domain 2 of 3, from 191 to 231: score 63.3, E = 3.3e-19
*->TCCrlssGewgCCPfpqAVCCeDgqHCCPqGfhCdadggrClq<-*
TCC+l +G++gCCP p+AVCC D HCCP Gf+C+ + C q
T22H2.6a 191 TCCLLEQGSYGCCPVPNAVCCADMLHCCPNGFTCHGQ--FCSQ 231
granulin: domain 3 of 3, from 294 to 337: score 23.6, E = 3e-06
*->TCCrlssGewg.....CCPfpqAVCCeDgqHCCPqGfhCdadggrCl
TCC ++G+ g++++ CCP+++A+CCe CCP+G+hC g+C+
T22H2.6a 294 TCCN-VRGKNGepktmCCPLSNAICCENT--CCPAGYHCVDG-GKCE 336
q<-*
+
T22H2.6a 337 K 337