Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T23D8.7
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Query: T23D8.7 CE14058 status:Partially_confirmed TR:Q9XVI3 protein_id:CAB03400.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 301.7 8.7e-87 1
PAZ PAZ domain 179.3 2.4e-50 1
IBR IBR domain 3.7 9.4 1
Herpes_PAP Herpesvirus polymerase accessory protein 3.4 1.5 1
APG17 Autophagy protein Apg17 1.6 8.1 1
Fanconi Fanconi anaemia group C protein 1.0 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Fanconi 1/1 110 125 .. 581 596 .] 1.0 8.4
IBR 1/1 111 132 .. 1 22 [. 3.7 9.4
PAZ 1/1 289 426 .. 1 161 [] 179.3 2.4e-50
Herpes_PAP 1/1 478 486 .. 313 321 .] 3.4 1.5
APG17 1/1 706 718 .. 1 13 [. 1.6 8.1
Piwi 1/1 574 882 .. 1 341 [] 301.7 8.7e-87
Alignments of top-scoring domains:
Fanconi: domain 1 of 1, from 110 to 125: score 1.0, E = 8.4
*->srKLAReLLkELraqv<-*
s+KL R +L+ L++q
T23D8.7 110 SKKLNRTILRTLQEQN 125
IBR: domain 1 of 1, from 111 to 132: score 3.7, E = 9.4
*->eKYerlllesyVesnpdlkwCP<-*
+K r++l+ e+np+l+ CP
T23D8.7 111 KKLNRTILRTLQEQNPGLIECP 132
PAZ: domain 1 of 1, from 289 to 426: score 179.3, E = 2.4e-50
*->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
+++le+ +++t + lsd ++kk+++++ GlkVet+h+ +
T23D8.7 289 AEILEVPLATVTDG--RSLSDVQKKKFNREVAGLKVETRHCSC---- 329
eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
pr++++a+++++p+++++F+l +++Gn+++k +++eY+k++Yni+L+
T23D8.7 330 --PRRFRVARCTWKPTENISFHLSETAGNQDSKPLSLVEYYKRRYNIDLT 377
ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
y++lP+++vg+++ + +lP+ELc +v+gQr++kkl+
T23D8.7 378 YKHLPCIEVGRTREC---------------ILPLELCYVVSGQRCIKKLN 412
erqtsalikkraqr<-*
e q+++li+++++
T23D8.7 413 EQQIANLIRATSRN 426
Herpes_PAP: domain 1 of 1, from 478 to 486: score 3.4, E = 1.5
*->PNtKkQkCg<-*
PN K+Q C+
T23D8.7 478 PNLKRQECV 486
APG17: domain 1 of 1, from 706 to 718: score 1.6, E = 8.1
*->Mneadvlkivnfa<-*
M+e+ +i+nf+
T23D8.7 706 MCEMTREAIINFR 718
Piwi: domain 1 of 1, from 574 to 882: score 301.7, E = 8.7e-87
*->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
l+++++p ++ y+e+K+++++ g+++Qcv+ +++k s+
T23D8.7 574 LVLCIVPGKSVV------YGELKRKGELL-GLTTQCVRSQNVSKASP 613
qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
+ tl N+++k+n+KlGG+N +l++++ + ++ +p+l+i
T23D8.7 614 H----TLSNLCMKINSKLGGINVILSSPPQS----------LNSEPVLFI 649
GfDvshppaRTkfDrenggrlnn.......psvagvvasmdsphgtkfrg
G+ ++++ ++ + +++ + + s+a +v+smd h+t+f
T23D8.7 650 GCHLTRSS-------LASSSDSTssiahcdSSIACLVGSMDG-HPTQFSP 691
dvrlqpagqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGq
+r+qp++q ++ d+ + ++re++++f+k+t+ kP +Ii+YR G +
T23D8.7 692 IFRTQPRHQRTIVDMCE-MTREAIINFRKSTG-FKPHKIIIYRAGIADVT 739
fsqvlnyEvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksd
+++ E++++++ac +++ ++q P +t+I +HhtR+Fa+++ d
T23D8.7 740 VDEIMQTELRAVRDACAMIEYGFQ---PGITFIGLDVTHHTRLFAANEKD 786
ggskakaqNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyD
+ ++ +qNvp GT+V++ it + ++Fyl+s+ag+qGT++Pt+Y V +D
T23D8.7 787 R--VGNSQNVPAGTLVETGITVNNLFEFYLVSHAGIQGTSRPTKYVVMWD 834
digeyylsadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnl
d+ + + ++Ty+LC++ r+tr+vs+P PvyYA+l+A+r++ ++
T23D8.7 835 DNS---IPSADIHEMTYQLCHTQSRCTRSVSIPSPVYYAKLVAQRAKILM 881
k<-*
+
T23D8.7 882 A 882