Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T23D8.7
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Query:  T23D8.7  CE14058    status:Partially_confirmed TR:Q9XVI3 protein_id:CAB03400.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
Piwi       Piwi domain                                  301.7    8.7e-87   1
PAZ        PAZ domain                                   179.3    2.4e-50   1
IBR        IBR domain                                     3.7        9.4   1
Herpes_PAP Herpesvirus polymerase accessory protein       3.4        1.5   1
APG17      Autophagy protein Apg17                        1.6        8.1   1
Fanconi    Fanconi anaemia group C protein                1.0        8.4   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Fanconi      1/1     110   125 ..   581   596 .]     1.0      8.4
IBR          1/1     111   132 ..     1    22 [.     3.7      9.4
PAZ          1/1     289   426 ..     1   161 []   179.3  2.4e-50
Herpes_PAP   1/1     478   486 ..   313   321 .]     3.4      1.5
APG17        1/1     706   718 ..     1    13 [.     1.6      8.1
Piwi         1/1     574   882 ..     1   341 []   301.7  8.7e-87

Alignments of top-scoring domains:
Fanconi: domain 1 of 1, from 110 to 125: score 1.0, E = 8.4
                   *->srKLAReLLkELraqv<-*
                      s+KL R +L+ L++q
     T23D8.7   110    SKKLNRTILRTLQEQN    125

IBR: domain 1 of 1, from 111 to 132: score 3.7, E = 9.4
                   *->eKYerlllesyVesnpdlkwCP<-*
                      +K  r++l+   e+np+l+ CP
     T23D8.7   111    KKLNRTILRTLQEQNPGLIECP    132

PAZ: domain 1 of 1, from 289 to 426: score 179.3, E = 2.4e-50
                   *->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
                      +++le+  +++t    + lsd ++kk+++++ GlkVet+h+ +
     T23D8.7   289    AEILEVPLATVTDG--RSLSDVQKKKFNREVAGLKVETRHCSC---- 329

                   eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
                     pr++++a+++++p+++++F+l +++Gn+++k  +++eY+k++Yni+L+
     T23D8.7   330 --PRRFRVARCTWKPTENISFHLSETAGNQDSKPLSLVEYYKRRYNIDLT 377

                   ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
                   y++lP+++vg+++ +               +lP+ELc +v+gQr++kkl+
     T23D8.7   378 YKHLPCIEVGRTREC---------------ILPLELCYVVSGQRCIKKLN 412

                   erqtsalikkraqr<-*
                   e q+++li+++++
     T23D8.7   413 EQQIANLIRATSRN    426

Herpes_PAP: domain 1 of 1, from 478 to 486: score 3.4, E = 1.5
                   *->PNtKkQkCg<-*
                      PN K+Q C+
     T23D8.7   478    PNLKRQECV    486

APG17: domain 1 of 1, from 706 to 718: score 1.6, E = 8.1
                   *->Mneadvlkivnfa<-*
                      M+e+   +i+nf+
     T23D8.7   706    MCEMTREAIINFR    718

Piwi: domain 1 of 1, from 574 to 882: score 301.7, E = 8.7e-87
                   *->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
                      l+++++p ++        y+e+K+++++  g+++Qcv+  +++k s+
     T23D8.7   574    LVLCIVPGKSVV------YGELKRKGELL-GLTTQCVRSQNVSKASP 613

                   qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
                   +    tl N+++k+n+KlGG+N +l++++ +          ++ +p+l+i
     T23D8.7   614 H----TLSNLCMKINSKLGGINVILSSPPQS----------LNSEPVLFI 649

                   GfDvshppaRTkfDrenggrlnn.......psvagvvasmdsphgtkfrg
                   G+  ++++        ++  + +++  + + s+a +v+smd  h+t+f
     T23D8.7   650 GCHLTRSS-------LASSSDSTssiahcdSSIACLVGSMDG-HPTQFSP 691

                   dvrlqpagqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGq
                    +r+qp++q ++ d+ + ++re++++f+k+t+  kP +Ii+YR G  +
     T23D8.7   692 IFRTQPRHQRTIVDMCE-MTREAIINFRKSTG-FKPHKIIIYRAGIADVT 739

                   fsqvlnyEvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksd
                      +++ E++++++ac +++ ++q   P +t+I    +HhtR+Fa+++ d
     T23D8.7   740 VDEIMQTELRAVRDACAMIEYGFQ---PGITFIGLDVTHHTRLFAANEKD 786

                   ggskakaqNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyD
                   +  ++ +qNvp GT+V++ it +  ++Fyl+s+ag+qGT++Pt+Y V +D
     T23D8.7   787 R--VGNSQNVPAGTLVETGITVNNLFEFYLVSHAGIQGTSRPTKYVVMWD 834

                   digeyylsadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnl
                   d+     +   + ++Ty+LC++  r+tr+vs+P PvyYA+l+A+r++ ++
     T23D8.7   835 DNS---IPSADIHEMTYQLCHTQSRCTRSVSIPSPVYYAKLVAQRAKILM 881

                   k<-*
                   +
     T23D8.7   882 A    882



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