Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T23G5.2
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Query: T23G5.2 CE01099 SEC14 (yeast) status:Partially_confirmed SW:Q03606 protein_id:CAA79573.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CRAL_TRIO CRAL/TRIO domain 294.4 1.4e-84 1
MSF1 MSF1-like conserved region 228.9 1.4e-65 1
CRAL_TRIO_N CRAL/TRIO, N-terminus 99.6 6.5e-29 1
Smr Smr domain 6.1 0.51 1
Cellulose_synt Cellulose synthase 2.8 1.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MSF1 1/1 17 173 .. 1 164 [] 228.9 1.4e-65
Smr 1/1 158 187 .. 41 78 .. 6.1 0.51
CRAL_TRIO_N 1/1 270 337 .. 1 89 [] 99.6 6.5e-29
Cellulose_synt 1/1 464 487 .. 875 898 .] 2.8 1.7
CRAL_TRIO 1/1 352 541 .. 1 188 [] 294.4 1.4e-84
Alignments of top-scoring domains:
MSF1: domain 1 of 1, from 17 to 173: score 228.9, E = 1.4e-65
*->eqVtaAfwrrYPNCPisphVisvDVleRevddedGkVLhTeRLltkq
e V+aA+++r+P+CP++p++++++V ++++ dG+ + R +++
T23G5.2 17 EIVMAAYEMRFPTCPQIPIFVGSEVTYEYKSV-DGAEWVIDRKCQLN 62
nrvPrWlkkVligvadtvyvlEeSvvDpkkrtltleTrNltfssilsVdE
+++P+++kk ++g +d+vy+++++++D++krtl++e++N++fss+++V+E
T23G5.2 63 VEAPYLVKK-IAG-VDYVYFSQKNSLDRRKRTLDIEATNISFSSRINVKE 110
rctYtphpeNpsnwTvfkQeAsissvkgslfglsskvEkwslkrFseNas
+ctY++h eN+ nwT+f+Q+As++ vk+ +fgl+s+vEk++++++++N++
T23G5.2 111 NCTYYVHAENE-NWTCFEQSASLD-VKN-FFGLESAVEKLAVRQYGANLA 157
KGregmEyvleefleee<-*
KG+e++E+++ee l ++
T23G5.2 158 KGKEILEFFIEE-LLKK 173
Smr: domain 1 of 1, from 158 to 187: score 6.1, E = 0.51
*->kGnhssggtgvLkpaVpewLkqpfhphVksfheappne<-*
kG + +L +++e+Lk+ h+ +f++a ++e
T23G5.2 158 KG------KEILEFFIEELLKK--TTHIERFRDADQEE 187
CRAL_TRIO_N: domain 1 of 1, from 270 to 337: score 99.6, E = 6.5e-29
*->gtpgnltpeqeraykskLkeetLkelryelseknkteeldkgykerl
+++g+l+p L+e++L+e++y+l+ +++k++l
T23G5.2 270 RFLGQLSP---------LEESRLCEIKYSLQ---------AHHKGKL 298
kawldDatlLRFLRARKFdvaaAiemftktlkWRrEfGvnei<-*
++Da+lLRFLRAR+Fdva+A++m+++++ WR++++v++i
T23G5.2 299 ---PNDAHLLRFLRARDFDVAKAKDMVHASIIWRKQHNVDKI 337
Cellulose_synt: domain 1 of 1, from 464 to 487: score 2.8, E = 1.7
*->ifSLLWvrInPfvsktdgpslele<-*
+f LW I+Pf+++++ +++++
T23G5.2 464 VFPVLWTLISPFIDEKTRKKFMVS 487
CRAL_TRIO: domain 1 of 1, from 352 to 541: score 294.4, E = 1.4e-84
*->pqfihgtdkdGrpvylekrGklntkvmlkittlhrmlkklvyeverl
p+++h++dk+Grp+y++++G+l+tk+ml+ ++ +++l+kl+++++++
T23G5.2 352 PGCWHNSDKAGRPMYILRFGQLDTKGMLR-SCGVENLVKLTLSICED 397
tlyrlpaasrklgtlingsctvfDlkGvsmssmaspvlsvlkkvinilqd
l+r+++a+rklgt+i+++++v+Dl+G+sm+++++p++++l+k+i+i+++
T23G5.2 398 GLQRAAEATRKLGTPISSWSLVVDLDGLSMRHLWRPGVQCLLKIIEIVEA 447
yYPErlgkfylinaPwlFstvyklIKpFLDektrsKifvlGss...Ykee
+YPE++g++++++aP++F+++++lI+pF+Dektr+K++v+G+s++++kee
T23G5.2 448 NYPETMGQVLVVRAPRVFPVLWTLISPFIDEKTRKKFMVSGGSggdLKEE 497
LlkhipaenLPakfGGtlktkydkcgvwlsdvgpwrdeeqigfe<-*
L+khi+++++P+++GG+++t++++ g +++++++++ eeq+g++
T23G5.2 498 LRKHIEEKFIPDFLGGSCLTTNCGLGGHVPKSMYLPVEEQEGAS 541