Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T23G5.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  T23G5.2  CE01099   SEC14 (yeast) status:Partially_confirmed SW:Q03606 protein_id:CAA79573.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
CRAL_TRIO      CRAL/TRIO domain                         294.4    1.4e-84   1
MSF1           MSF1-like conserved region               228.9    1.4e-65   1
CRAL_TRIO_N    CRAL/TRIO, N-terminus                     99.6    6.5e-29   1
Smr            Smr domain                                 6.1       0.51   1
Cellulose_synt Cellulose synthase                         2.8        1.7   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
MSF1             1/1      17   173 ..     1   164 []   228.9  1.4e-65
Smr              1/1     158   187 ..    41    78 ..     6.1     0.51
CRAL_TRIO_N      1/1     270   337 ..     1    89 []    99.6  6.5e-29
Cellulose_synt   1/1     464   487 ..   875   898 .]     2.8      1.7
CRAL_TRIO        1/1     352   541 ..     1   188 []   294.4  1.4e-84

Alignments of top-scoring domains:
MSF1: domain 1 of 1, from 17 to 173: score 228.9, E = 1.4e-65
                   *->eqVtaAfwrrYPNCPisphVisvDVleRevddedGkVLhTeRLltkq
                      e V+aA+++r+P+CP++p++++++V  ++++  dG+  +  R +++
     T23G5.2    17    EIVMAAYEMRFPTCPQIPIFVGSEVTYEYKSV-DGAEWVIDRKCQLN 62

                   nrvPrWlkkVligvadtvyvlEeSvvDpkkrtltleTrNltfssilsVdE
                   +++P+++kk ++g +d+vy+++++++D++krtl++e++N++fss+++V+E
     T23G5.2    63 VEAPYLVKK-IAG-VDYVYFSQKNSLDRRKRTLDIEATNISFSSRINVKE 110

                   rctYtphpeNpsnwTvfkQeAsissvkgslfglsskvEkwslkrFseNas
                   +ctY++h eN+ nwT+f+Q+As++ vk+ +fgl+s+vEk++++++++N++
     T23G5.2   111 NCTYYVHAENE-NWTCFEQSASLD-VKN-FFGLESAVEKLAVRQYGANLA 157

                   KGregmEyvleefleee<-*
                   KG+e++E+++ee l ++
     T23G5.2   158 KGKEILEFFIEE-LLKK    173

Smr: domain 1 of 1, from 158 to 187: score 6.1, E = 0.51
                   *->kGnhssggtgvLkpaVpewLkqpfhphVksfheappne<-*
                      kG      + +L  +++e+Lk+    h+ +f++a ++e
     T23G5.2   158    KG------KEILEFFIEELLKK--TTHIERFRDADQEE    187

CRAL_TRIO_N: domain 1 of 1, from 270 to 337: score 99.6, E = 6.5e-29
                   *->gtpgnltpeqeraykskLkeetLkelryelseknkteeldkgykerl
                      +++g+l+p         L+e++L+e++y+l+         +++k++l
     T23G5.2   270    RFLGQLSP---------LEESRLCEIKYSLQ---------AHHKGKL 298

                   kawldDatlLRFLRARKFdvaaAiemftktlkWRrEfGvnei<-*
                      ++Da+lLRFLRAR+Fdva+A++m+++++ WR++++v++i
     T23G5.2   299 ---PNDAHLLRFLRARDFDVAKAKDMVHASIIWRKQHNVDKI    337

Cellulose_synt: domain 1 of 1, from 464 to 487: score 2.8, E = 1.7
                   *->ifSLLWvrInPfvsktdgpslele<-*
                      +f  LW  I+Pf+++++  +++++
     T23G5.2   464    VFPVLWTLISPFIDEKTRKKFMVS    487

CRAL_TRIO: domain 1 of 1, from 352 to 541: score 294.4, E = 1.4e-84
                   *->pqfihgtdkdGrpvylekrGklntkvmlkittlhrmlkklvyeverl
                      p+++h++dk+Grp+y++++G+l+tk+ml+ ++ +++l+kl+++++++
     T23G5.2   352    PGCWHNSDKAGRPMYILRFGQLDTKGMLR-SCGVENLVKLTLSICED 397

                   tlyrlpaasrklgtlingsctvfDlkGvsmssmaspvlsvlkkvinilqd
                    l+r+++a+rklgt+i+++++v+Dl+G+sm+++++p++++l+k+i+i+++
     T23G5.2   398 GLQRAAEATRKLGTPISSWSLVVDLDGLSMRHLWRPGVQCLLKIIEIVEA 447

                   yYPErlgkfylinaPwlFstvyklIKpFLDektrsKifvlGss...Ykee
                   +YPE++g++++++aP++F+++++lI+pF+Dektr+K++v+G+s++++kee
     T23G5.2   448 NYPETMGQVLVVRAPRVFPVLWTLISPFIDEKTRKKFMVSGGSggdLKEE 497

                   LlkhipaenLPakfGGtlktkydkcgvwlsdvgpwrdeeqigfe<-*
                   L+khi+++++P+++GG+++t++++ g +++++++++ eeq+g++
     T23G5.2   498 LRKHIEEKFIPDFLGGSCLTTNCGLGGHVPKSMYLPVEEQEGAS    541



[DB home][top]