Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T23G7.3
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Query: T23G7.3 CE03704 status:Confirmed TR:Q22705 protein_id:CAA92701.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
G-patch G-patch domain 58.2 1.9e-15 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
G-patch 1/1 26 70 .. 1 45 [] 58.2 1.9e-15
Alignments of top-scoring domains:
G-patch: domain 1 of 1, from 26 to 70: score 58.2, E = 1.9e-15
*->tsniGfklLqKMGWkeGqGLGkneqGivePieakikkdraGLGae<-
+kl++KMGW+eG GLG+n qG+++ ++ k ++ ++GLGa+
T23G7.3 26 DQKLSKKLMEKMGWSEGDGLGRNRQGNADSVKLKANTSGRGLGAD 70
*
T23G7.3 - -