Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T23G7.1
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Query: T23G7.1 CE21197 locus:dpl-1 transcription factor DP-1 status:Confirmed SW:Q22703 protein_id:CAA92699.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
E2F_TDP Transcription factor E2F/dimerisation p 505.8 3.2e-148 2
Ribosomal_L13 Ribosomal protein L13 4.6 7.1 1
DUF211 Uncharacterized ArCR, COG1888 3.7 5.9 1
DUF403 Bacterial domain of unknown function (D 3.3 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF403 1/1 89 106 .. 306 323 .] 3.3 5.9
DUF211 1/1 290 310 .. 75 95 .] 3.7 5.9
E2F_TDP 1/2 72 312 .. 1 250 [] 495.2 5.2e-145
E2F_TDP 2/2 452 490 .. 208 250 .] 7.0 0.63
Ribosomal_L13 1/1 493 504 .. 119 130 .] 4.6 7.1
Alignments of top-scoring domains:
DUF403: domain 1 of 1, from 89 to 106: score 3.3, E = 5.9
*->itevrrvGdaIaqeYFva<-*
+t ++v+d++ ++YF +
T23G7.1 89 LTNYNEVADELVADYFQN 106
DUF211: domain 1 of 1, from 290 to 310: score 3.7, E = 5.9
*->HsvDevvAGkkivEevktpqD<-*
H vDe++A +k vE +k ++
T23G7.1 290 HYVDEIIANRKKVEAEKEEKR 310
E2F_TDP: domain 1 of 2, from 72 to 312: score 495.2, E = 5.2e-145
*->GlRhrseKslekvtkKfvtllnEvADgvVdlnaannLanrLavqkqa
GlRh+s+K++ekv++K++t++nEvAD++V+++++nnL+++++v+kq+
T23G7.1 72 GLRHFSTKVCEKVKEKGLTNYNEVADELVADYFQNNLIKQIDVVKQE 118
YDqKNIkRRiYDilNVLegINiIeKkSKkeIqWiGLPAnSaqecqnleVe
YD+KNI+RR+YD+lNVL+++NiI+K+ Kk+I+WiGLPA+++qe+++le+e
T23G7.1 119 YDMKNIRRRVYDALNVLLAMNIITKS-KKDIRWIGLPASASQEISRLEEE 167
kerRlerIkqkseqLeemelQldafknLvqrnrknesqdvrpspnlayvl
k+rR+++I++k+++Leem+lQ++++knLv+rnrkne++++rp+++++++l
T23G7.1 168 KSRREASISSKKQALEEMVLQIVSYKNLVERNRKNEHKNGRPENDTVLHL 217
pfdIvNvdltkkqtvivisapsdkqlylfnfdktfEihddiEisLKrmgg
pf+I+N t+k++++++s++sdk+++lf+fdk+fEihdd+Ei LK++++
T23G7.1 218 PFLIIN---TDKEANVECSVSSDKSEFLFSFDKKFEIHDDFEI-LKKLNL 263
pchlesCgectpedikpakspvPpaleeyvtaistspwlklgvtpvtpqk
+c+le+ +++t+e++k+aks++P+++++yv++i+++ +++v++++++k
T23G7.1 264 ACSLET-TNPTAEEVKTAKSFLPTLHQHYVDEIIAN---RKKVEAEKEEK 309
ssn<-*
+++
T23G7.1 310 RKQ 312
E2F_TDP: domain 2 of 2, from 452 to 490: score 7.0, E = 0.63
*->tpedikpakspvPpaleeyvtaistspwlklgvtpvtpqkssn<-*
t+ +++p+k vP +++ ++ +++ v p pq s +
T23G7.1 452 TSVNSGPVKYYVPQGHQPMHQPVGQR----YRVRPQQPQMSHM 490
Ribosomal_L13: domain 1 of 1, from 493 to 504: score 4.6, E = 7.1
*->Phaaqkpvvldl<-*
Ph++q++vv+++
T23G7.1 493 PHQVQQRVVYPA 504