Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T23G7.4
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Query: T23G7.4 CE03705 locus:sec-5 status:Partially_confirmed TR:Q22706 protein_id:CAA92702.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TIG IPT/TIG domain 53.0 1.2e-12 1
bZIP bZIP transcription factor 4.9 7 1
Porin_2 Porin subfamily 3.3 3.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TIG 1/1 13 98 .. 1 105 [] 53.0 1.2e-12
Porin_2 1/1 264 285 .. 371 392 .] 3.3 3.7
bZIP 1/1 853 880 .. 38 65 .] 4.9 7
Alignments of top-scoring domains:
TIG: domain 1 of 1, from 13 to 98: score 53.0, E = 1.2e-12
*->PvItsisPssgplsGGteiTitGsnlgsgsrPrirkntfededikVt
P++t +sP + +Gt+iTi+G+nlg + + + i+ +
T23G7.4 13 PTVTGLSP--TEGVPGTQITIRGENLG----------NDQSDVIMLF 47
fggtpvpCdvisssss.tqivCktPpva.pgpsppvvtvsvdgggsgdgr
++g++ + + s+++i ++++++++ + v++ ++gg +
T23G7.4 48 ICGID--SLWSMKWKSpSKIIARVGAASrGPGE---VRIATKSGG----K 88
ssspvtFtYv<-*
+ss+v F+++
T23G7.4 89 GSSNVKFRVF 98
Porin_2: domain 1 of 1, from 264 to 285: score 3.3, E = 3.7
*->rdvgeDsTedyfaGiVRlqrsf<-*
r + +D+T ++ + iVR+ f
T23G7.4 264 RKDDADATRNALGVIVRFKFIF 285
bZIP: domain 1 of 1, from 853 to 880: score 4.9, E = 7
*->LeaeNkaLrkelerLkkevakLksenee<-*
L++ ++++r l++L++++++L +++++
T23G7.4 853 LKNMRTTMRMALQSLEQHAENLGDDSHN 880