Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T24B8.6
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Query: T24B8.6 CE03714 locus:hlh-3 helix-loop-helix protein status:Partially_confirmed TR:Q22717 protein_id:CAA92758.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HLH Helix-loop-helix DNA-binding domain 70.1 2.5e-17 1
SRP19 SRP19 protein 6.8 2.2 1
DUF295 Protein of unknown function (DUF295) 4.4 2.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HLH 1/1 60 113 .. 1 53 [] 70.1 2.5e-17
SRP19 1/1 98 113 .. 89 104 .] 6.8 2.2
DUF295 1/1 146 166 .. 368 388 .] 4.4 2.7
Alignments of top-scoring domains:
HLH: domain 1 of 1, from 60 to 113: score 70.1, E = 2.5e-17
*->rRrahnarERrRRdriNdafeeLrellPtla..pskKlsKaeiLrlA
+++ n+rER+R+d++N++f L+e +P a ++++KlsK+e+Lr+A
T24B8.6 60 TKQKRNERERKRVDQVNQGFVLLQERVPK-AagNKAKLSKVETLREA 105
veYIksLq<-*
+YI++Lq
T24B8.6 106 ARYIQELQ 113
SRP19: domain 1 of 1, from 98 to 113: score 6.8, E = 2.2
*->KekLlreIAkkikekr<-*
K+++lre+A++i e+
T24B8.6 98 KVETLREAARYIQELQ 113
DUF295: domain 1 of 1, from 146 to 166: score 4.4, E = 2.7
*->sisaisglpslgfPyWiPPqs<-*
s a +++ps+ +Py++PPq
T24B8.6 146 SMMAQTPSPSYTSPYYPPPQM 166