Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T24C12.3
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Query: T24C12.3 CE31247 status:Partially_confirmed TR:Q22721 protein_id:AAA82388.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Indigoidine_A Indigoidine synthase A like protein 720.3 8.9e-213 1
pfkB pfkB family carbohydrate kinase 132.8 1.8e-37 1
Ribosomal_S5 Ribosomal protein S5, N-terminal domai 5.9 4.3 1
Ribosomal_L38e Ribosomal L38e protein family 5.4 1.9 1
HycI Hydrogenase maturation protease 4.6 5.7 1
DUF155 Uncharacterized ACR, YagE family COG17 3.6 3.4 1
MutS_V MutS domain V 2.3 7.9 1
Transaldolase Transaldolase 2.1 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF155 1/1 207 233 .. 1 31 [. 3.6 3.4
HycI 1/1 252 267 .. 125 140 .] 4.6 5.7
Ribosomal_S5 1/1 250 269 .. 48 67 .] 5.9 4.3
Indigoidine_A 1/1 20 312 .. 1 320 [] 720.3 8.9e-213
Transaldolase 1/1 489 513 .. 1 30 [. 2.1 7.3
MutS_V 1/1 536 551 .. 230 245 .] 2.3 7.9
Ribosomal_L38e 1/1 585 596 .. 66 77 .] 5.4 1.9
pfkB 1/1 332 649 .. 1 326 [] 132.8 1.8e-37
Alignments of top-scoring domains:
DUF155: domain 1 of 1, from 207 to 233: score 3.6, E = 3.4
*->mrcsaYCtassynmkellrhlkkprtlqgle<-*
+r+ Ct+s ++ll+ k+++ l+
T24C12.3 207 DRKAQFCTESLEEVVHLLKTSKSLG----LP 233
HycI: domain 1 of 1, from 252 to 267: score 4.6, E = 5.7
*->eVkkaidkAvelilre<-*
+++kaid Av++++++
T24C12.3 252 AIQKAIDQAVQEAIEQ 267
Ribosomal_S5: domain 1 of 1, from 250 to 269: score 5.9, E = 4.3
*->peAIrKAiedAKknlieVpr<-*
++AI+KAi++A+ ie ++
T24C12.3 250 GDAIQKAIDQAVQEAIEQNI 269
Indigoidine_A: domain 1 of 1, from 20 to 312: score 720.3, E = 8.9e-213
*->peVkeALenGkPVVALESTIItHGMPYPqNveYtAreVEeiVRenGA
p+VkeAL++G++VVALEST+ItHG+PYP+N+ tAr++E++VR++G+
T24C12.3 20 PQVKEALASGEGVVALESTVITHGLPYPHNLS-TARSLEQKVRSSGS 65
iPATIAIldGrikiGLSdeELElLAEKPrsgknvqKvSrRDLpfVVAqgg
+PATIA++dG+i++GL+de+LElLA +s+ n++KvS+RD+++++++++
T24C12.3 66 HPATIALFDGKIHVGLDDEKLELLA---SSQ-NAVKVSSRDIAKTLIKKE 111
nGATTVAaTMiiAalaGIkVFATGGIGGVHRGAehsmDISADLtELsrTp
+G+TTVA+TM+iA++aGI+VFATGGIGGVHRGA++++D+SADL+ELs+Tp
T24C12.3 112 VGGTTVASTMKIAHAAGISVFATGGIGGVHRGADQTFDVSADLQELSQTP 161
VaVVsAGvKSILDIpkTLEyLETqgVPvigygsPkdeVFPAFFsRkSGfk
V+VV++GvKSILDIpkT+EyLET++V++i+yg+ ++VFP+FF+R+S++k
T24C12.3 162 VCVVCSGVKSILDIPKTVEYLETHSVNCIVYGQ--ENVFPSFFTRTSDRK 209
vPlrlespeeiArllGKCYLCtLiPYHLEiKPLLPkskwqLglegGvlvA
+++++es+ee+++ll k++++Lgl++G+++A
T24C12.3 210 AQFCTESLEEVVHLL--------------------KTSKSLGLPYGTILA 239
nPIPEehaipkdeIEaaIeeAvaeAeaqGItGKevTPFLLarvvElTgGr
+PIPE++a+++d+I++aI++Av+eA++q+I++++vTPF+Larv+ElT+G+
T24C12.3 240 CPIPEKYAADGDAIQKAIDQAVQEAIEQNIASQSVTPFILARVNELTQGA 289
SLkaNIaLVeNNAalAaeIAvaL<-*
S+++NIaL+eNNA++A+++A++L
T24C12.3 290 SMATNIALLENNASIAGRLAAKL 312
Transaldolase: domain 1 of 1, from 489 to 513: score 2.1, E = 7.3
*->kvvlDdLSRDtgdieeIkklapigiiqGvT<-*
v+l+ di+++kk++++g++ vT
T24C12.3 489 QVWLE-----PTDIDKVKKVFDTGLVGAVT 513
MutS_V: domain 1 of 1, from 536 to 551: score 2.3, E = 7.9
*->sVverArevLaeLEer<-*
sV++ A vL+ +E++
T24C12.3 536 SVIDTADGVLELIEKE 551
Ribosomal_L38e: domain 1 of 1, from 585 to 596: score 5.4, E = 1.9
*->QSLPPgLkVkeL<-*
QSLPP L+ + +
T24C12.3 585 QSLPPPLQMNKV 596
pfkB: domain 1 of 1, from 332 to 649: score 132.8, E = 1.8e-37
*->mtkvvviGeandiDliptveglpegelnervksfekgpGGagaNvAv
++kvv+iG ++ +D+ + + + ++ ++ ++++++ GG ++N A
T24C12.3 332 KPKVVSIGATI-VDFEAITSEDVKDDGGSYNGQVVQRMGGVARNHAD 377
alarLGnpsygkvafiGkvGdDefGefllelLkkeGVdtdyvvvdegtrT
alarLG +++ fi+++GdD+ G+f+++ ++ +d++ v++ +++T
T24C12.3 378 ALARLG----CDSVFISAIGDDNNGHFFRQN--SHKIDINRVKIISNKPT 421
glalvlvdgdgGertivfyrganadltleel..dedllaeadvlhlsgis
+++l++ + + iv + + t+ + +++ed+l++ d++ l++
T24C12.3 422 CTYLAVNVKGNVKYGIVTCEPLLSVITPSLVesNEDALESSDFILLDS-- 469
lvllpepspeetlealaeaaraggkisfdpnlrdplwsdeealekllell
++ + +++ + e+a++++ +++ p d + + l
T24C12.3 470 ------NLSVPVMARVLEIAKKHD----KQVWLEPTDID-KVKKVFDTGL 508
.pkadivkpNeeElelltgekg.........dveealaalhkllakGav.
++ + pN+ E+ +++ + +++ ++ + +l+ +k + k +
T24C12.3 509 vGAVTAASPNANEFLKWAKLCHvsvdpsvidTADGVLELIEKEKTKLLLn 558
tklVvvTlGadGallvt.....kggevhvpav.pkvkvVDTtGAGDaFva
t +++vTl +G+++v++++ ++ +++ p++ + kvV++ GAGD+F++
T24C12.3 559 TSIFIVTLANKGSAVVYrnklgQLEFQSLPPPlQMNKVVSVSGAGDSFNS 608
GflagLlanddsstdldgkdleealrfanaaAalvvqkkGais.s.lptr
G++agL++ +k++ e+l+ ++ +A l+ q + ais++ +p +
T24C12.3 609 GVIAGLAH---------NKTVVESLQIGQECARLTLQTSLAISdAiTPNL 649
<-*
T24C12.3 - -