Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T24C12.3
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Query:  T24C12.3  CE31247    status:Partially_confirmed TR:Q22721 protein_id:AAA82388.3

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Indigoidine_A  Indigoidine synthase A like protein      720.3   8.9e-213   1
pfkB           pfkB family carbohydrate kinase          132.8    1.8e-37   1
Ribosomal_S5   Ribosomal protein S5, N-terminal domai     5.9        4.3   1
Ribosomal_L38e Ribosomal L38e protein family              5.4        1.9   1
HycI           Hydrogenase maturation protease            4.6        5.7   1
DUF155         Uncharacterized ACR, YagE family COG17     3.6        3.4   1
MutS_V         MutS domain V                              2.3        7.9   1
Transaldolase  Transaldolase                              2.1        7.3   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
DUF155           1/1     207   233 ..     1    31 [.     3.6      3.4
HycI             1/1     252   267 ..   125   140 .]     4.6      5.7
Ribosomal_S5     1/1     250   269 ..    48    67 .]     5.9      4.3
Indigoidine_A    1/1      20   312 ..     1   320 []   720.3 8.9e-213
Transaldolase    1/1     489   513 ..     1    30 [.     2.1      7.3
MutS_V           1/1     536   551 ..   230   245 .]     2.3      7.9
Ribosomal_L38e   1/1     585   596 ..    66    77 .]     5.4      1.9
pfkB             1/1     332   649 ..     1   326 []   132.8  1.8e-37

Alignments of top-scoring domains:
DUF155: domain 1 of 1, from 207 to 233: score 3.6, E = 3.4
                   *->mrcsaYCtassynmkellrhlkkprtlqgle<-*
                      +r+   Ct+s    ++ll+  k+++    l+
    T24C12.3   207    DRKAQFCTESLEEVVHLLKTSKSLG----LP    233

HycI: domain 1 of 1, from 252 to 267: score 4.6, E = 5.7
                   *->eVkkaidkAvelilre<-*
                      +++kaid Av++++++
    T24C12.3   252    AIQKAIDQAVQEAIEQ    267

Ribosomal_S5: domain 1 of 1, from 250 to 269: score 5.9, E = 4.3
                   *->peAIrKAiedAKknlieVpr<-*
                      ++AI+KAi++A+   ie ++
    T24C12.3   250    GDAIQKAIDQAVQEAIEQNI    269

Indigoidine_A: domain 1 of 1, from 20 to 312: score 720.3, E = 8.9e-213
                   *->peVkeALenGkPVVALESTIItHGMPYPqNveYtAreVEeiVRenGA
                      p+VkeAL++G++VVALEST+ItHG+PYP+N+  tAr++E++VR++G+
    T24C12.3    20    PQVKEALASGEGVVALESTVITHGLPYPHNLS-TARSLEQKVRSSGS 65

                   iPATIAIldGrikiGLSdeELElLAEKPrsgknvqKvSrRDLpfVVAqgg
                   +PATIA++dG+i++GL+de+LElLA   +s+ n++KvS+RD+++++++++
    T24C12.3    66 HPATIALFDGKIHVGLDDEKLELLA---SSQ-NAVKVSSRDIAKTLIKKE 111

                   nGATTVAaTMiiAalaGIkVFATGGIGGVHRGAehsmDISADLtELsrTp
                   +G+TTVA+TM+iA++aGI+VFATGGIGGVHRGA++++D+SADL+ELs+Tp
    T24C12.3   112 VGGTTVASTMKIAHAAGISVFATGGIGGVHRGADQTFDVSADLQELSQTP 161

                   VaVVsAGvKSILDIpkTLEyLETqgVPvigygsPkdeVFPAFFsRkSGfk
                   V+VV++GvKSILDIpkT+EyLET++V++i+yg+  ++VFP+FF+R+S++k
    T24C12.3   162 VCVVCSGVKSILDIPKTVEYLETHSVNCIVYGQ--ENVFPSFFTRTSDRK 209

                   vPlrlespeeiArllGKCYLCtLiPYHLEiKPLLPkskwqLglegGvlvA
                   +++++es+ee+++ll                    k++++Lgl++G+++A
    T24C12.3   210 AQFCTESLEEVVHLL--------------------KTSKSLGLPYGTILA 239

                   nPIPEehaipkdeIEaaIeeAvaeAeaqGItGKevTPFLLarvvElTgGr
                   +PIPE++a+++d+I++aI++Av+eA++q+I++++vTPF+Larv+ElT+G+
    T24C12.3   240 CPIPEKYAADGDAIQKAIDQAVQEAIEQNIASQSVTPFILARVNELTQGA 289

                   SLkaNIaLVeNNAalAaeIAvaL<-*
                   S+++NIaL+eNNA++A+++A++L
    T24C12.3   290 SMATNIALLENNASIAGRLAAKL    312

Transaldolase: domain 1 of 1, from 489 to 513: score 2.1, E = 7.3
                   *->kvvlDdLSRDtgdieeIkklapigiiqGvT<-*
                       v+l+       di+++kk++++g++  vT
    T24C12.3   489    QVWLE-----PTDIDKVKKVFDTGLVGAVT    513

MutS_V: domain 1 of 1, from 536 to 551: score 2.3, E = 7.9
                   *->sVverArevLaeLEer<-*
                      sV++ A  vL+ +E++
    T24C12.3   536    SVIDTADGVLELIEKE    551

Ribosomal_L38e: domain 1 of 1, from 585 to 596: score 5.4, E = 1.9
                   *->QSLPPgLkVkeL<-*
                      QSLPP L+ + +
    T24C12.3   585    QSLPPPLQMNKV    596

pfkB: domain 1 of 1, from 332 to 649: score 132.8, E = 1.8e-37
                   *->mtkvvviGeandiDliptveglpegelnervksfekgpGGagaNvAv
                      ++kvv+iG ++ +D+ + + +   ++  ++ ++++++ GG ++N A
    T24C12.3   332    KPKVVSIGATI-VDFEAITSEDVKDDGGSYNGQVVQRMGGVARNHAD 377

                   alarLGnpsygkvafiGkvGdDefGefllelLkkeGVdtdyvvvdegtrT
                   alarLG    +++ fi+++GdD+ G+f+++   ++ +d++ v++  +++T
    T24C12.3   378 ALARLG----CDSVFISAIGDDNNGHFFRQN--SHKIDINRVKIISNKPT 421

                   glalvlvdgdgGertivfyrganadltleel..dedllaeadvlhlsgis
                   +++l++  + +    iv   +  +  t+ + +++ed+l++ d++ l++
    T24C12.3   422 CTYLAVNVKGNVKYGIVTCEPLLSVITPSLVesNEDALESSDFILLDS-- 469

                   lvllpepspeetlealaeaaraggkisfdpnlrdplwsdeealekllell
                         ++ + +++ + e+a++++      +++ p   d   + +    l
    T24C12.3   470 ------NLSVPVMARVLEIAKKHD----KQVWLEPTDID-KVKKVFDTGL 508

                   .pkadivkpNeeElelltgekg.........dveealaalhkllakGav.
                      ++ + pN+ E+  +++    + +++  ++ + +l+  +k + k   +
    T24C12.3   509 vGAVTAASPNANEFLKWAKLCHvsvdpsvidTADGVLELIEKEKTKLLLn 558

                   tklVvvTlGadGallvt.....kggevhvpav.pkvkvVDTtGAGDaFva
                   t +++vTl  +G+++v++++ ++ +++  p++ +  kvV++ GAGD+F++
    T24C12.3   559 TSIFIVTLANKGSAVVYrnklgQLEFQSLPPPlQMNKVVSVSGAGDSFNS 608

                   GflagLlanddsstdldgkdleealrfanaaAalvvqkkGais.s.lptr
                   G++agL++         +k++ e+l+ ++ +A l+ q + ais++ +p +
    T24C12.3   609 GVIAGLAH---------NKTVVESLQIGQECARLTLQTSLAISdAiTPNL 649

                   <-*

    T24C12.3     -     -



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