Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T24F1.6
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Query: T24F1.6 CE02366 calcium channel alpha-2 subunit status:Partially_confirmed TR:Q17517 protein_id:CAA90091.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cache Cache domain 118.8 6.9e-32 2
vwa von Willebrand factor type A domain 11.9 0.008 1
Filamin Filamin/ABP280 repeat 3.8 7.6 1
Omt_N O-methyltransferase N-terminus 3.8 8.1 1
Rotamase PPIC-type PPIASE domain 3.6 8.2 1
DUF324 Protein of unknown function (DUF324) 3.2 3.2 1
Adenylsucc_synt Adenylosuccinate synthetase 1.7 8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF324 1/1 101 147 .. 285 333 .] 3.2 3.2
vwa 1/1 315 354 .. 1 44 [. 11.9 0.008
Cache 1/2 525 609 .. 1 93 [] 115.9 4.5e-31
Rotamase 1/1 685 693 .. 1 9 [. 3.6 8.2
Filamin 1/1 692 699 .. 93 100 .] 3.8 7.6
Adenylsucc_synt 1/1 873 882 .. 1 10 [. 1.7 8
Omt_N 1/1 885 900 .. 90 106 .. 3.8 8.1
Cache 2/2 911 934 .. 70 93 .] 2.9 22
Alignments of top-scoring domains:
DUF324: domain 1 of 1, from 101 to 147: score 3.2, E = 3.2
*->tifEilvkvnrefykevlefenkkerfkkveedfeklvydkleedkY
ti+E+ +++ + + + ++fe rf +v+e fekl d+ + k+
T24F1.6 101 TIEEAPASIAQFSANILRDFET-QSRFSLVQEEFEKLKPDIKSK-KE 145
le<-*
T24F1.6 146 DA 147
vwa: domain 1 of 1, from 315 to 354: score 11.9, E = 0.008
*->DivFllDgSgSigeenrFekvkdfvkklveknldigpdgtrvgl<-*
DivFllD SgS+ + ++k ++ +++ l +p++ +g+
T24F1.6 315 DIVFLLDYSGSVKGPT-MHLIKITMMYILS-TL--SPNDYFFGV 354
Cache: domain 1 of 2, from 525 to 609: score 115.9, E = 4.5e-31
*->wTePYvdaastgdlViTvsvPvydrtnetenktnkdngdllGVvgiD
wT+ Y++++ ++++++T+s+P+++ +++++++++l GVv+iD
T24F1.6 525 WTQLYMETQ-GTGPIVTLSLPILT-----SEQRIWRDQKLAGVVAID 565
vpledLlkltksiklGktGYaFivdnnGkvlaHPnlrpvtkllkdw<-*
+++++++k+++ ++++Y +ivdnnG++++HP+l++++++++++
T24F1.6 566 ISIKEFTKHLPTS--SEQMYGYIVDNNGMLIYHPQLQIPKTEVHCV 609
Rotamase: domain 1 of 1, from 685 to 693: score 3.6, E = 8.2
*->pkevrarHI<-*
+ke++++HI
T24F1.6 685 SKEYHCSHI 693
Filamin: domain 1 of 1, from 692 to 699: score 3.8, E = 7.6
*->hiPgSPfk<-*
hi++SPf+
T24F1.6 692 HIKDSPFT 699
Adenylsucc_synt: domain 1 of 1, from 873 to 882: score 1.7, E = 8
*->rnvVVlGsQW<-*
+ ++V+G+QW
T24F1.6 873 NRLAVVGTQW 882
Omt_N: domain 1 of 1, from 885 to 900: score 3.8, E = 8.1
*->rffDdyflaAlraaGir<-*
+ffD+yf++++ +++++
T24F1.6 885 NFFDQYFDNFT-RQNPD 900
Cache: domain 2 of 2, from 911 to 934: score 2.9, E = 22
*->ivdnnGkvlaHPnlrpvtkllkdw<-*
i+++nG v+a +r++ +l k++
T24F1.6 911 IITRNGHVIASSAHRAPAHLAKFD 934