Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T24H7.2
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Query: T24H7.2 CE02884 status:Partially_confirmed TR:Q22758 protein_id:AAA68352.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HSP70 Hsp70 protein 171.6 1.6e-49 4
Peptidase_M28 Peptidase family M28 5.4 2.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M28 1/1 182 202 .. 262 282 .] 5.4 2.1
HSP70 1/4 114 424 .. 88 395 .. 177.6 2.8e-51
HSP70 2/4 535 772 .. 478 620 .] 5.7 0.44
HSP70 3/4 848 869 .. 599 620 .] 1.1 9.4
HSP70 4/4 883 904 .. 518 539 .. -8.7 6.4e+03
Alignments of top-scoring domains:
Peptidase_M28: domain 1 of 1, from 182 to 202: score 5.4, E = 2.1
*->avaalagalvleladdpvlpf<-*
++a++ag++vl+l++d+++ +
T24H7.2 182 RAAQMAGLTVLQLINDGTAAA 202
HSP70: domain 1 of 4, from 114 to 424: score 177.6, E = 2.8e-51
*->ykvvkdsngdawveveylGkkktftPeeISAmvLqKmKetAEayLGe
+ v +++++ ++ + +G+ +t e Am+L K+ E+y
T24H7.2 114 FEVDDAPKNASSINFKLGGE--SYTVEALTAMILANAKKFTEEYAQA 158
k.VtkAVITVPAYFNDaQRQATKDAGkIAGLnVlRIiNEPTAAALAYGLD
+++++VITVP YF+ a+R A+ A++ AGL Vl +iN+ TAAAL+ G++
T24H7.2 159 AeIKDVVITVPVYFTPAERLAVERAAQMAGLTVLQLINDGTAAALSHGIF 208
Kkdlpe.eekernilVfDLGGGTFDVSiLeigdG........VFEVkaTn
+ e ek++ V+D+G i+e++ +++ +++++ V+
T24H7.2 209 RRK--EiGEKPQRLMVYDMGAAKTTATIVEFKLVkekyekqpKMTVLGVG 256
GDThLGGeDFDnrlvdhlveeFkkkegi..DlskDkrAlqRLreAAEKAK
+D LGG nrl dhl+e F+k+++ ++ + +++rA+ + +AE++K
T24H7.2 257 FDRTLGGIEMTNRLRDHLIEMFEKNYKPktKVNTNRRAMTKFSKEAERLK 306
ieLSsssqTeinLpfitadadGPkhlsetLtRAkFEeLvadLfeRtlePv
+LS+ ++e +++a + + ++ ++tR+ F+ L++d R eP
T24H7.2 307 QVLSA--NAEHFAQIESAHE-D-IDAKLKVTREDFNHLISDMESRFGEPI 352
ekaLkDAklsksdIdeVvLVGGSTRIPkVqelVkefFGdGKePskgvNPD
e+aL+ A + ++dId vL G TR+PkVqe+V++ G Ke k +N D
T24H7.2 353 EQALRMAQIPIDDIDQFVLMGAGTRVPKVQEIVQKTIG-TKEIGKFLNTD 401
EAVAiGAAvQaGVLsGseeVkDv<-*
EAVA+GA +Qa+ Ls ++Vk +
T24H7.2 402 EAVAMGALFQAAHLSKGFKVKPF 424
HSP70: domain 2 of 4, from 535 to 772: score 5.7, E = 0.44
*->IEVtFdIDANGIlnVsAkD...k.gtgkeqkItItnssgrLsddEIe
++V+F +DA GI+ V ++ ++ +g + +I t s+ s++ +e
T24H7.2 535 VKVSFIVDASGIVRVRRAEalfEpKSGLVGSIASTISGL-FSSKTEE 580
r.................................................
+++++++++++++++++++++ + ++++++++++++ ++++++++++++
T24H7.2 581 Gepttddstpqsteekteekesvkvedstpepepetpvnstseespktne 630
.............................................MvkdA
++++ ++++ ++ ++++++ ++ + + +++ ++ +++ + ++ + +
T24H7.2 631 teknassgnatevkekkkelpsivrlritnkypsafvpnkydvqeEKRRM 680
EkyaeeDkkrkeriEakNeaEsyvystekslkeeklgdklseadkekiek
E++ae+++ + er+ + Ne+Es ++ + l+e + d + +++k+k+e+
T24H7.2 681 EAFAEKERLASERAAVENELESFNFECSQYLEETEFTDYMADEEKTKLED 730
kvedaiewLkealegeddaekeeikakteeLqkvvqkigekmyq<-*
v+ +wL++ + ++ + ++ + + eL+ vv + ++
T24H7.2 731 SVKRIRAWLEDDVTKDT--PTKDFTDNLLELKNVVRSVKKRQEH 772
HSP70: domain 3 of 4, from 848 to 869: score 1.1, E = 9.4
*->eikakteeLqkvvqkigekmyq<-*
+i +kt++L+ +v +++km +
T24H7.2 848 DIDTKTKNLNREVDRFMKKMKK 869
HSP70: domain 4 of 4, from 883 to 904: score -8.7, E = 6.4e+03
*->EIerMvkdAEkyaeeDkkrker<-*
+I+ v++AEk ++e k+ke+
T24H7.2 883 DIDTIVEEAEKKKAEQDKKKEK 904