Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T24H7.1
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Query: T24H7.1 CE02883 Prohibitin status:Confirmed SW:P50093 protein_id:AAA68353.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Band_7 SPFH domain / Band 7 family 211.0 1.5e-59 1
COLFI Fibrillar collagen C-terminal domain 1.4 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
COLFI 1/1 81 89 .. 1 10 [. 1.4 4.7
Band_7 1/1 31 223 .. 1 203 [] 211.0 1.5e-59
Alignments of top-scoring domains:
COLFI: domain 1 of 1, from 81 to 89: score 1.4, E = 4.7
*->lksPeGksrk<-*
++sP+G s++
T24H7.1 81 IRSPTG-SKD 89
Band_7: domain 1 of 1, from 31 to 223: score 211.0, E = 1.5e-59
*->siyvVpegeravvfrlGrfqkdddnrfskptvlgPGlhfliPfidrv
s ++V+ g+ra++f++ +++++d + +Glhf+iP+++ +
T24H7.1 31 SMFTVEAGHRAIMFNRIGGLSTD--------LYKEGLHFRIPWFQYP 69
rlirvDlRtqtidvprpqeviTkDnvtvnvdavvyyri.dpeklplavyg
i++D+R ++ +++ +++++kD+++vn+ ++++ +++pe l +++++
T24H7.1 70 --IIYDIRARPNQIR--SPTGSKDLQMVNIG-LRVLSRpNPEHLVHIYRT 114
vedpedeqairqlaqttlRsviGkmtldelltdReeineklqealnieil
++++ +e++++++++++l++v++k+++++l+t+R+++++++++ +l
T24H7.1 115 LGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVSMLVRK-----TL 159
deatddwGGievedVeikdiepPeeiqrAmekqqvaqqe........ieA
e++ d++ i ++dV+++++ +++++++A+e++qva+qe ++ + ++A
T24H7.1 160 IERALDFN-IILDDVSLTELAFSPQYSAAVEAKQVAAQEaqratfyvERA 208
eRekrAaiieaEger<-*
++k+ +i++aEge+
T24H7.1 209 KQQKQEKIVQAEGEA 223