Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T25C8.2
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Query: T25C8.2 CE16463 locus:act-5 Actins status:Confirmed TR:O45815 protein_id:CAB05817.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
actin Actin 928.2 4.5e-282 1
FHA FHA domain 7.0 3.6 1
biopterin_H Biopterin-dependent aromatic amino acid h 1.8 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FHA 1/1 239 251 .. 66 81 .] 7.0 3.6
biopterin_H 1/1 310 328 .. 316 334 .] 1.8 6.6
actin 1/1 1 375 [] 1 379 [] 928.2 4.5e-282
Alignments of top-scoring domains:
FHA: domain 1 of 1, from 239 to 251: score 7.0, E = 3.6
*->SPkPvrLkdGDvIrlG<-*
S ++L dG vI++G
T25C8.2 239 S---YELPDGQVITIG 251
biopterin_H: domain 1 of 1, from 310 to 328: score 1.8, E = 6.6
*->ldsinsElqiLtnAlakis<-*
+d ++ E+q+L+ ki+
T25C8.2 310 ADRMQKEIQHLAPSTMKIK 328
actin: domain 1 of 1, from 1 to 375: score 928.2, E = 4.5e-282
*->msdeevqalvvDnGsgmvKaGfaGddapravfpsivgrpkhkgvmvg
++ee++alvvDnGsgm+KaGfaGddapravfpsivgrp+h+gvmvg
T25C8.2 1 -MEEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 46
agmdqkdayvgdEaqskrgiltlkYPiehGivtnwddmekiwhhtfYnEL
m+qkd+yvgdEaqskrgiltlkYPiehGivtnwddmekiwhhtfYnEL
T25C8.2 47 --MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 94
rvapeeHpvLLtEaPlnPKanREkmtqimFEtfnvpamYvaiqavLsLya
r+apeeHpvLLtEaPlnPK+nREkmtqimFEtfn+pamYv+iqavLsLya
T25C8.2 95 RIAPEEHPVLLTEAPLNPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYA 144
sGRttGivlDsGDGvsHtvpiyeGyalpHailrldlAGRDLtdylmkiLt
sGRttGivlD+GDGv+HtvpiyeGyalpHai+rldlAGRDLtdy+mkiLt
T25C8.2 145 SGRTTGIVLDTGDGVTHTVPIYEGYALPHAIQRLDLAGRDLTDYMMKILT 194
ergysftttAerEivrdiKEkLcyvAldyeeelktakesseleksyeLpD
ergy+ftttAerEivrdiKEkLcyvA d+e+el++a++ss+leksyeLpD
T25C8.2 195 ERGYTFTTTAEREIVRDIKEKLCYVAHDFESELAAAASSSSLEKSYELPD 244
GqvitigneRfrcpevLfqpsllggkEaagihettynsimkCDvDiRkdL
GqvitigneRfrcpevLfqp+++ g+E agihetty+simkCDvDiRkdL
T25C8.2 245 GQVITIGNERFRCPEVLFQPAFI-GMEGAGIHETTYQSIMKCDVDIRKDL 293
ygnivLsGGttmfpgiaerlskeitalaPssmkikviapPeRkysvWiGG
y+n vLsGGt+mfpgia+r++kei++laPs+mkik+iapPeRkysvWiGG
T25C8.2 294 YANTVLSGGTSMFPGIADRMQKEIQHLAPSTMKIKIIAPPERKYSVWIGG 343
silasLstfqqmwitKeeYdesGpsivHrKCf<-*
silasLstfqqmwi+K+eYdesGpsivHrKCf
T25C8.2 344 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 375