Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T25E12.8
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Query: T25E12.8 CE16469 C-type lectin status:Partially_confirmed TR:O45822 protein_id:CAB04826.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lectin_c Lectin C-type domain 54.0 1.2e-12 3
zf-BED BED zinc finger 5.1 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-BED 1/1 113 132 .. 1 24 [. 5.1 5.9
lectin_c 1/3 121 233 .. 1 125 [] 31.3 1.1e-06
lectin_c 2/3 256 289 .. 1 40 [. 19.5 0.0013
lectin_c 3/3 309 357 .. 62 125 .] 9.8 0.45
Alignments of top-scoring domains:
zf-BED: domain 1 of 1, from 113 to 132: score 5.1, E = 5.9
*->SkvWkhFtkve..eeedgkevegkak<-*
+k+W+ Ft ++++e++dg a+
T25E12.8 113 HKCWRLFTDLQtrENADG------AC 132
lectin_c: domain 1 of 3, from 121 to 233: score 31.3, E = 1.1e-06
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty
t + A+ aC++ gg+ L sI+++ E++++ f + ++
T25E12.8 121 DLQTRENADGACMRYGGS-TLFSIRNEQENNAMLGFMLNAGV---DN 163
aWIGLt.dintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdC
+W+GL +t +++w + e +g+ +y a+ +P+n+ + +C
T25E12.8 164 LWTGLIcVGKTTFSCTW-DME-SGTTSVYN-SFASESPDNTYG-----NC 205
veiytdtdflaGkWnDepCdsklpyvCef<-*
v +++ t++ aG+W++ C++ + +vCe
T25E12.8 206 V-YFIITGTQAGQWKSGLCNMTMSFVCEL 233
lectin_c: domain 2 of 3, from 256 to 289: score 19.5, E = 0.0013
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsl<-*
s t eA+ +C ++ ++ LvsI+sa E+ +f++ +
T25E12.8 256 DSDTVVEAQRFCNTKCAN--LVSIHSANEN----RFIQTI 289
lectin_c: domain 3 of 3, from 309 to 357: score 9.8, E = 0.45
*->vwegwetdgspvnytenWapgePnnrgnhGgnEdCveiytdtdflaG
vw +dgsp y n +++ n+ Cv +++ ++++ G
T25E12.8 309 VW----MDGSPQLYN-NIQDNS---------NGTCVFMRILWGGA-G 340
kWnDepCdsklpyvCef<-*
W ++C + ++C++
T25E12.8 341 YWYTIDCVKRSWFLCKR 357