Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T25F10.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T25F10.6 CE07537 calponin-like protein status:Confirmed TR:Q23050 protein_id:AAB04989.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
calponin Calponin family repeat 160.0 4.8e-48 7
Filaggrin Filaggrin 3.3 4.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
calponin 1/7 103 128 .. 1 26 [] 34.0 5.7e-09
calponin 2/7 154 177 .. 1 26 [] 22.9 1.6e-05
calponin 3/7 201 226 .. 1 26 [] 30.3 7.6e-08
Filaggrin 1/1 233 240 .. 48 55 .] 3.3 4.3
calponin 4/7 241 266 .. 1 26 [] 44.9 2.3e-12
calponin 5/7 290 310 .. 6 26 .] 10.8 0.088
calponin 6/7 325 350 .. 1 26 [] 24.1 6.6e-06
calponin 7/7 383 398 .. 11 26 .] 9.4 0.24
Alignments of top-scoring domains:
calponin: domain 1 of 7, from 103 to 128: score 34.0, E = 5.7e-09
*->iGLqmGtnKgAsqaGmtaYGtprrli<-*
i +q G+nK+Asq+Gmt++G pr +i
T25F10.6 103 IPIQAGSNKYASQKGMTGFGVPRDVI 128
calponin: domain 2 of 7, from 154 to 177: score 22.9, E = 1.6e-05
*->iGLqmGtnKgAsqaGmtaYGtprrli<-*
Lq GtnK+Asq+G +++G r +
T25F10.6 154 --LQSGTNKFASQKGQSGFGAVRDVN 177
calponin: domain 3 of 7, from 201 to 226: score 30.3, E = 7.6e-08
*->iGLqmGtnKgAsqaGmtaYGtprrli<-*
+ Lq GtnK AsqaGmt+ G+pr +
T25F10.6 201 VPLQSGTNKLASQAGMTGIGMPRIVD 226
Filaggrin: domain 1 of 1, from 233 to 240: score 3.3, E = 4.3
*->QdsDSEGH<-*
Qd+DS+G
T25F10.6 233 QDRDSQGF 240
calponin: domain 4 of 7, from 241 to 266: score 44.9, E = 2.3e-12
*->iGLqmGtnKgAsqaGmtaYGtprrli<-*
i LqmGtnK+A qaGmt++G+pr+ i
T25F10.6 241 IHLQMGTNKFANQAGMTGFGMPRHNI 266
calponin: domain 5 of 7, from 290 to 310: score 10.8, E = 0.088
*->GtnKgAsqaGmtaYGtprrli<-*
G gAsqaGmt++G r
T25F10.6 290 GWKEGASQAGMTGFGAFRNNT 310
calponin: domain 6 of 7, from 325 to 350: score 24.1, E = 6.6e-06
*->iGLqmGtnKgAsqaGmtaYGtprrli<-*
i qmG n sqaG t++G+pr+++
T25F10.6 325 IPYQMGVNFLESQAGKTGFGQPRQVY 350
calponin: domain 7 of 7, from 383 to 398: score 9.4, E = 0.24
*->AsqaGmtaYGtprrli<-*
A q Gmta+Gtpr +
T25F10.6 383 ANQTGMTAFGTPRDVR 398