Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T25G3.2
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Query: T25G3.2 CE06511 locus:chi-1 chitin synthase like status:Partially_confirmed TR:Q22791 protein_id:CAA96688.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Chitin_synth_2 Chitin synthase 45.4 1.5e-12 2
Glycos_transf_2 Glycosyl transferase 10.0 0.085 1
MOSC_N MOSC N-terminal beta barrel domain 7.5 0.81 1
DUF155 Uncharacterized ACR, YagE family COG1 4.3 2.1 1
HypA Hydrogenase expression/synthesis hypA 2.9 5.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HypA 1/1 532 542 .. 111 121 .] 2.9 5.2
DUF155 1/1 548 573 .. 83 108 .. 4.3 2.1
Chitin_synth_2 1/2 711 790 .. 204 285 .. 24.9 1.3e-06
Glycos_transf_2 1/1 705 798 .. 75 149 .] 10.0 0.085
MOSC_N 1/1 816 831 .. 121 140 .] 7.5 0.81
Chitin_synth_2 2/2 819 861 .. 326 370 .. 20.4 2.5e-05
Alignments of top-scoring domains:
HypA: domain 1 of 1, from 532 to 542: score 2.9, E = 5.2
*->DeLrIkslEVe<-*
DeLrI++ EV+
T25G3.2 532 DELRIRNDEVD 542
DUF155: domain 1 of 1, from 548 to 573: score 4.3, E = 2.1
*->fGviVfWGftEieEkniLsdIvkaav<-*
+G++++W tE+e +++L+ I k +v
T25G3.2 548 YGCATMWHETETEMRQVLRSILKLDV 573
Chitin_synth_2: domain 1 of 2, from 711 to 790: score 24.9, E = 1.3e-06
*->ivLmVDADTkVfPDSLtrmVaamvkDpeImGlCGETk.IaNkrqSWV
++L +D D k +PD+L r+ m + I CG +I N W
T25G3.2 711 FILAIDGDSKFEPDALLRLLHLMNAKSDIGCACGRIHpIGNGIMVWY 757
TaIQVFEYYISHHlsKAFESvFGgVTCLPGCFsmYR<-*
Q FEY I H KA E vFG V C PGCFs+ R
T25G3.2 758 ---QKFEYAIAHWFQKAAEHVFGCVLCAPGCFSLFR 790
Glycos_transf_2: domain 1 of 1, from 705 to 798: score 10.0, E = 0.085
*->khAtGdydyiaflDaDdev.pdwlekllellekngadivig.rv.in
++A+ +i+ +D D ++pd+l +ll l+++ +++ ++r++++
T25G3.2 705 QMADNT--FILAIDGDSKFePDALLRLLHLMNAKSDIGCACgRIhPI 749
.e.n.kgr........lngk.l.r.l.l.v.fli.snalyrrealekll<
+++ + + + +++ + + + v +++++++l+r +al++
T25G3.2 750 gNgImVWYqkfeyaiaHWFQkAaEhVfGcVlCAPgCFSLFRASALMDDN 798
-*
T25G3.2 - -
MOSC_N: domain 1 of 1, from 816 to 831: score 7.5, E = 0.81
*->ldcGDaaaaqAWfSdfLgkp<-*
+d+G+ ++ W+S++L k+
T25G3.2 816 YDQGE---DR-WLSTLLLKQ 831
Chitin_synth_2: domain 2 of 2, from 819 to 861: score 20.4, E = 2.5e-05
*->GEDRYLtTLmLktFPkrKqvFVPqAkCkTiaPDsFkVLLSQRRRW<-
GEDR+L+TL+Lk ++ + + T aP+ F+ + QRRRW
T25G3.2 819 GEDRWLSTLLLKQ--GYRIEYAAASDAETYAPEGFEEFFNQRRRW 861
*
T25G3.2 - -