Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T26C12.1
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Query: T26C12.1 CE26009 acetolactate synthase status:Confirmed TR:O61856 protein_id:AAC17553.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TPP_enzymes_N Thiamine pyrophosphate enzyme, N-termin 133.2 4.7e-37 1
TPP_enzymes_C Thiamine pyrophosphate enzyme, C-termin 72.5 9.3e-24 1
TPP_enzymes Thiamine pyrophosphate enzyme, central 52.7 8.4e-14 1
TRAG TraG/TraD family 1.7 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TRAG 1/1 63 97 .. 574 607 .] 1.7 7.1
TPP_enzymes_N 1/1 54 216 .. 1 173 [. 133.2 4.7e-37
TPP_enzymes 1/1 273 428 .. 1 168 [] 52.7 8.4e-14
TPP_enzymes_C 1/1 448 549 .. 1 105 [. 72.5 9.3e-24
Alignments of top-scoring domains:
TRAG: domain 1 of 1, from 63 to 97: score 1.7, E = 7.1
*->AsLmLAqdltedfkaelnkpt.alsksvklgdkdl<-*
As++ A d+ e+f ++ + +++l ++ klg k++
T26C12.1 63 ASVLKAHDVEEIFVLCGGHISpILVAAEKLGIKIV 97
TPP_enzymes_N: domain 1 of 1, from 54 to 216: score 133.2, E = 4.7e-37
*->ekatgadylaerLeqqGVdtvFGyPGgaiLpllDaLyaeespgirhi
+k +g++++a +L++++V+ +F+ Gg i p+l a gi+++
T26C12.1 54 SKRHGGELVASVLKAHDVEEIFVLCGGHISPILVAAEK---LGIKIV 97
lcRHEqgAafAAdGyARltGKpGVclvTsGPGatNlvtGiAdAyadsvPv
RHE A+fAAd++ARl+ +GV++vT GPG tN +t+ +A + P+
T26C12.1 98 DTRHEVTAVFAADAVARLRQSIGVAAVTAGPGLTNTITAVKNAQMAESPL 147
laItGqvgrsdqadhighdafQEvDityqvgisrpitkysylvtspediP
l+I G+ ++ g +a+Q+ D+ + ++rp +ky ++v + di
T26C12.1 148 LLIGGAAPTLL----KGRGALQDIDQ---MVLFRPLCKYVARVERLRDIV 190
riideAfrtAtsgRpGPVyvdiPkDv<-*
+ eA+ +A sg pGPV+v++P Dv
T26C12.1 191 PTVREAIKAAKSGCPGPVFVEFPVDV 216
TPP_enzymes: domain 1 of 1, from 273 to 428: score 52.7, E = 8.4e-14
*->leaaieqaaqliksAkkPVilvGgGair.AgaeeelrelaEalqiPv
++++i++++ql ksAk+PV+l+G+ a ++ + ++l++ +Eal++Pv
T26C12.1 273 KSEKIQEIVQLVKSAKRPVLLIGSQATLpPVKPADLVKAVEALGCPV 319
vtTlmaKGivpedhdsppfylgmlGmhgtaaaneAleeADlviavGaRFN
+ ma+G++ dh p+++ + + Al+ ADl i+ G++
T26C12.1 320 FLGGMARGLLGKDH---PLQMRQV-------RRDALKDADLTILAGTVC- 358
dDrvtgkltafaknakkriihiDiDpaeigkakfp....dvaivGDikal
d r ++ t ++k k i+ ++ + k+ ++ ++dv++++D+ +
T26C12.1 359 DFRLSYGRTLSKK-SK--IVALNRNSSQLTKNEKAfwnsDVSVQADVATS 405
ltaLlqllkaraeerledisewkqql<-*
l +++++l+a+ ++ +ew ++l
T26C12.1 406 LVQVANALGAN---HTTTPTEWVKSL 428
TPP_enzymes_C: domain 1 of 1, from 448 to 549: score 72.5, E = 9.3e-24
*->pseeplkpqevirtlskflfldpdaivttDvGqhqmWaaqflklpkp
+ + l+p +++rtl++ l++dai+++D+G++ aa ++ +p
T26C12.1 448 TN-GFLNPLNFLRTLDQ--SLPDDAILVADGGDFVGSAAYIVRPRGP 491
rrwitSgGlGTMGfgLPAAiGAklAaPerrViavsGDGSFqmtaQELaTa
+w++ g +GT G+g + A+GAk ++P+r V+ + GDGS +++ +E T
T26C12.1 492 LQWLDPGAFGTLGVGGGFALGAKTVYPKRPVYIIWGDGSCGYSLMEYDTF 541
vryklPvk<-*
+r klPv+
T26C12.1 542 ARHKLPVI 549