Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T26C5.2
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Query:  T26C5.2  CE06513    status:Partially_confirmed TR:Q22815 protein_id:CAA90727.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
PAN      PAN domain                                     149.1      1e-45   3
Eclosion Eclosion hormone                                 6.1          2   1
ThiI     Thiamine biosynthesis protein (ThiI)             3.5        6.4   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAN        1/3      24   101 ..     1   103 []    46.7  1.8e-13
ThiI       1/1     300   319 ..   185   204 .]     3.5      6.4
PAN        2/3     334   418 ..     1   103 []    56.3  1.6e-16
Eclosion   1/1     450   466 ..     1    19 [.     6.1        2
PAN        3/3     429   514 ..     1   103 []    61.0  5.5e-18

Alignments of top-scoring domains:
PAN: domain 1 of 3, from 24 to 101: score 46.7, E = 1.8e-13
                   *->Csggrsfhfervpgrsl.g..fdvsvvknvpsleeClalClneprsg
                      C       fer+p+++l + +   s++   +++++Cl  C+++++
     T26C5.2    24    C-------FERYPNHRLvNvrPYHSEW-RMKTEDMCLLFCAQSAS-- 60

                   leFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsqk
                      +Crs++Y+++++ C+ +s+ + +            +++ ++  +++
     T26C5.2    61 ---RCRSVVYDTVQHICHYFSDEGVD------------QAILSA--KMTY 93

                   vdyyenksC<-*
                       ++ sC
     T26C5.2    94 LRVVSQ-SC    101

ThiI: domain 1 of 1, from 300 to 319: score 3.5, E = 6.4
                   *->hPttrAkleeveKieeklll<-*
                      +P+t++  + ++K++++l++
     T26C5.2   300    KPVTISSTSYIQKAKSFLDE    319

PAN: domain 2 of 3, from 334 to 418: score 56.3, E = 1.6e-16
                   *->Csggrsfhfervpgrsl.g...fdvsvvknvpsleeClalClneprs
                      C+++  +++++++++   ++++++++   nvp+ +eC++ C +
     T26C5.2   334    CQQDDVDVWIAFENSAQaEeseNVDIDS-NVPNKRECEKICKEKN-- 377

                   gleFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsq
                        Crs+tY++k+++C+Ls++s g             ++k pp Sg++
     T26C5.2   378 -----CRSYTYFEKTHTCHLSTKSDGV------------TIKAPP-SGDF 409

                   kvdyyenksC<-*
                   ++++  + +C
     T26C5.2   410 TATTSTK-FC    418

Eclosion: domain 1 of 1, from 450 to 466: score 6.1, E = 2
                   *->rfdiassiDavevCleNCv<-*
                        d   ++D ++ C+e Cv
     T26C5.2   450    --DLPKGYDGMQLCIELCV    466

PAN: domain 3 of 3, from 429 to 514: score 61.0, E = 5.5e-18
                   *->Csggrsfhfervpgrsl.g....fdvsvvknvpsleeClalClnepr
                      Cs+     f++++++s + +  ++   + k+ + ++ C +lC+ +++
     T26C5.2   429    CSN-----FVAFRDYSVrIeaveEFNDLPKGYDGMQLCIELCVLSTK 470

                   sgleFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgs
                       F+Crs t+n+ +++C+L++e+s++          sp+ ++++  +
     T26C5.2   471 ----FTCRSSTFNPITGQCRLMTEDSMT----------SPDSFEYD--EF 504

                   qkvdyyenksC<-*
                   qk+ y+en +C
     T26C5.2   505 QKALYFEN-GC    514



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