Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T26C5.2
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Query: T26C5.2 CE06513 status:Partially_confirmed TR:Q22815 protein_id:CAA90727.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PAN PAN domain 149.1 1e-45 3
Eclosion Eclosion hormone 6.1 2 1
ThiI Thiamine biosynthesis protein (ThiI) 3.5 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PAN 1/3 24 101 .. 1 103 [] 46.7 1.8e-13
ThiI 1/1 300 319 .. 185 204 .] 3.5 6.4
PAN 2/3 334 418 .. 1 103 [] 56.3 1.6e-16
Eclosion 1/1 450 466 .. 1 19 [. 6.1 2
PAN 3/3 429 514 .. 1 103 [] 61.0 5.5e-18
Alignments of top-scoring domains:
PAN: domain 1 of 3, from 24 to 101: score 46.7, E = 1.8e-13
*->Csggrsfhfervpgrsl.g..fdvsvvknvpsleeClalClneprsg
C fer+p+++l + + s++ +++++Cl C+++++
T26C5.2 24 C-------FERYPNHRLvNvrPYHSEW-RMKTEDMCLLFCAQSAS-- 60
leFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsqk
+Crs++Y+++++ C+ +s+ + + +++ ++ +++
T26C5.2 61 ---RCRSVVYDTVQHICHYFSDEGVD------------QAILSA--KMTY 93
vdyyenksC<-*
++ sC
T26C5.2 94 LRVVSQ-SC 101
ThiI: domain 1 of 1, from 300 to 319: score 3.5, E = 6.4
*->hPttrAkleeveKieeklll<-*
+P+t++ + ++K++++l++
T26C5.2 300 KPVTISSTSYIQKAKSFLDE 319
PAN: domain 2 of 3, from 334 to 418: score 56.3, E = 1.6e-16
*->Csggrsfhfervpgrsl.g...fdvsvvknvpsleeClalClneprs
C+++ +++++++++ ++++++++ nvp+ +eC++ C +
T26C5.2 334 CQQDDVDVWIAFENSAQaEeseNVDIDS-NVPNKRECEKICKEKN-- 377
gleFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsq
Crs+tY++k+++C+Ls++s g ++k pp Sg++
T26C5.2 378 -----CRSYTYFEKTHTCHLSTKSDGV------------TIKAPP-SGDF 409
kvdyyenksC<-*
++++ + +C
T26C5.2 410 TATTSTK-FC 418
Eclosion: domain 1 of 1, from 450 to 466: score 6.1, E = 2
*->rfdiassiDavevCleNCv<-*
d ++D ++ C+e Cv
T26C5.2 450 --DLPKGYDGMQLCIELCV 466
PAN: domain 3 of 3, from 429 to 514: score 61.0, E = 5.5e-18
*->Csggrsfhfervpgrsl.g....fdvsvvknvpsleeClalClnepr
Cs+ f++++++s + + ++ + k+ + ++ C +lC+ +++
T26C5.2 429 CSN-----FVAFRDYSVrIeaveEFNDLPKGYDGMQLCIELCVLSTK 470
sgleFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgs
F+Crs t+n+ +++C+L++e+s++ sp+ ++++ +
T26C5.2 471 ----FTCRSSTFNPITGQCRLMTEDSMT----------SPDSFEYD--EF 504
qkvdyyenksC<-*
qk+ y+en +C
T26C5.2 505 QKALYFEN-GC 514